Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi295g00076 ATGGCGGACGTACTTTCCAAAAAGACCACCCACACCAACCCTAGCAAGAAGGAGACATCGAATCTCTTACTGGGTCGCTTTGAAATTGGGAAGCTCCTTGGCCATGGAACCTTTGCCAAGGTCTACTATGCGAGGAACGTCAAAACAGGAGAAGGGGTAGCCATCAAGGTGATTGACAAGGAGAAGATCCTAAAGGGTGGTTTGGTGGCACACATAAAACGCGAGATCTCCATTCTCCGCCGTGTCCGCCACCCAAACATCGTTCAACTCTTTGAGGTGATGGCTACCAAAACCAAGATCTATTTTGTAATGGAATATGTTCGTGGGGGTGAGCTTTTCAACAAGGTTGCAAAAGGGAGGTTGAAGGAGGAAGTTGCAAGGAAGTATTTTCAGCAATTGATCTCTGCCGTTGGATTCTGCCACGCCAGAGGGGTCTACCATAGGGATCTCAAGCCTGAAAATTTGTTGCTTGATGAGAATGGTAACCTCAAAGTCTCTGATTTTGGGCTCAGTGCGGTGTCTGATCAAATCAGACAAGATGGGTTGTTCCACACCTTTTGTGGCACTCCTGCTTATGTTGCTCCTGAGGTTTTGGCAAGGAAAGGGTATGATGGTGCAAAGGTTGATCTTTGGTCTTGTGGGGTTGTCTTGTTTGTGTTGATGGCAGGGTATTTGCCATTCCATGACCAGAATGTTATGGCAATGTATAAGAAGATTTACAGAGGTGAGTTTAGGTGCCCAAGGTGGTTCTCACCTGACTTATCTAAGCTCCTCACTCGTCTTCTTGATACCAAACCTGAAACAAGGATTGCCATTCCTGATATTATGGAGAACAAGTGGTTCAAAAAAGGGTTCAAACAAATTAAGTTTTATGTTGAGGATGATAGGCTTTGTAATGTTGATGATAGCGCCCTTATGGACAATGATGATGATACAGCATCCATAGCATCTGTTGTTTCAGATTACTCAATATCTGAGTCTGACTCTGAGGTAGAGACTAGAAGGAGGAATGCTCCATTGCCAAGACCAGCAAGTTTGAATGCTTTTGACATTATATCATTCTCCCCGGGTTTTGATCTTTCTGGATTGTTTGAGGAAAAAGGGGATGAGGCCAGGTTTGTGACTGCTGCACCAGTTTCCAAGATCATATCAAAATTGGAGGAAATTGCTCAGTTGGTTAGGTTTACTGTGAGGAAGAAAGATTGCAGGGTGAGCTTGGAGGGCACCAGAGAAGGTGTAAAGGGGCCATTGACTATTGCTGCTGAGATATTTGAATTGACACCTTCTTTGGTTGTGGTGGAAGTGAAGAAAAAAGGAGGGGACAGAGCTGAGTATGAGAGGTTTTGTAACAATGAATTGAAACCTGGGCTGCAGAATTTGGTGGCTGATGAATCTGCAACTTCTTCAACTTTGTCCACACCTACTGAGCCTTCCTTGCTGCGTGTGCTTTCTGAACCCACACACAACTTATCTTCGGATATGGAATCTCCATGCTATATGGCTTCAGATACCTGA 1515 0.4462 MADVLSKKTTHTNPSKKETSNLLLGRFEIGKLLGHGTFAKVYYARNVKTGEGVAIKVIDKEKILKGGLVAHIKREISILRRVRHPNIVQLFEVMATKTKIYFVMEYVRGGELFNKVAKGRLKEEVARKYFQQLISAVGFCHARGVYHRDLKPENLLLDENGNLKVSDFGLSAVSDQIRQDGLFHTFCGTPAYVAPEVLARKGYDGAKVDLWSCGVVLFVLMAGYLPFHDQNVMAMYKKIYRGEFRCPRWFSPDLSKLLTRLLDTKPETRIAIPDIMENKWFKKGFKQIKFYVEDDRLCNVDDSALMDNDDDTASIASVVSDYSISESDSEVETRRRNAPLPRPASLNAFDIISFSPGFDLSGLFEEKGDEARFVTAAPVSKIISKLEEIAQLVRFTVRKKDCRVSLEGTREGVKGPLTIAAEIFELTPSLVVVEVKKKGGDRAEYERFCNNELKPGLQNLVADESATSSTLSTPTEPSLLRVLSEPTHNLSSDMESPCYMASDT 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi295g00076 504 CDD CIPK_C 347 458 - -
Sebi295g00076 504 Pfam Protein kinase domain 27 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi295g00076 504 ProSiteProfiles NAF domain profile. 341 365 IPR018451 GO:0007165
Sebi295g00076 504 Pfam NAF domain 343 399 IPR004041 GO:0007165
Sebi295g00076 504 ProSiteProfiles Protein kinase domain profile. 27 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi295g00076 504 ProSitePatterns Protein kinases ATP-binding region signature. 33 56 IPR017441 GO:0005524
Sebi295g00076 504 CDD STKc_SnRK3 26 280 - -
Sebi295g00076 504 SMART serkin_6 27 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi295g00076 504 FunFam Non-specific serine/threonine protein kinase 17 334 - -
Sebi295g00076 504 SUPERFAMILY Protein kinase-like (PK-like) 23 329 IPR011009 -
Sebi295g00076 504 FunFam Non-specific serine/threonine protein kinase 343 461 - -
Sebi295g00076 504 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
Sebi295g00076 504 Gene3D Kinase associated domain 1, KA1 341 462 - -
Sebi295g00076 504 FunFam Non-specific serine/threonine protein kinase 18 106 - -
Sebi295g00076 504 Gene3D Transferase(Phosphotransferase) domain 1 17 338 - -
Sebi295g00076 504 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 19 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi295g00076 Sebi-Chr295 909157 910671 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi295g00076 5 479 CBL-interacting serine-threonine protein kinases AT4G18700 77.301 0.0 763
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Sebi295g00076 Pkinase 8.8e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi295g00076 - - gmx:100790133 900.968