Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi295g00075 ATGGAGAATAAAACAACAATTCTGATGCAAAGGTATGAGCTAGGACGCTTTCTTGGCCAAGGCAATTTCGCCAAAGTTTACCATGCAAGGAACTTGAAGACAGGCCAGAGCGTGGCCATCAAAGTCCTAAACAAAGAGATGATCATGAGGGTTGGCTTGAAGGAGCAAATCAAGCGCGAAATCTCAGTGATGCGTCTTATGAAGCACCCTAACATTGTGCAGCTCTATGAGGTCATGGCAAGCAAAACAAAGATATATTTTGCAATGGAATACGTGAAAGGTGGTGAGCTTTTCAACAAAGTATCCCGAGGGAGGCTGGGGGAAGATGTGGCCAGAAAATATTTCCAGCAGCTGATTGAAGCTGTTGATCACTGCCACAGCAGAGGGGTTTATCACCGTGACCTCAAACCTGAGAATCTTCTCCTTGATGAAAATGGGGACCTTAAAGTTTCAGACTTTGGCTTGAGTGCATTGTTGGAACACAGGAAGAATGATGGCCTTCTTCACACAACTTGTGGCACTCCAGCTTATGTAGCACCTGAGGTGATCAGGAAGAAAGGGTATGATGGAGCCAAGGCTGATATTTGGTCCTGTGGGGTCATTCTCTATGTTCTCTTGGCAGGTTTTCTTCCTTTCAATGATAAAAATCTAATGGAAATGTATAGGAAGATTGCCAGAGCAGATTTCAAGTTCCCACAATGGTTCCGTTCAGATGTGAAAAGGCTTCTCTATAGAATTCTTGATCCCAATCCAAGGACAAGAGTTAGCATTGCCAAGATCATGCAGAGCAGTTGGTTTAGAAAAGGGTATAAGCAGATTGAAGCACCCCTGTTGCCACCTTTATCCCCTAGAGGTGAGGATGTCTCGGATGTTCAGGATGCATTTGATTCATCAAGTTCAGATGGAGGTTCAGCATCAGATAAAGAAGAAGGCCCCATAAACCCATATTGTTTCAATGCATTTGATCTCATATCACTCTCTTCAGGATTTGATCTTTCTGGTCTGTTTGAAAATGACAAGAGTGAAAGACAGCAAGCAATATTTACTACTAAAAAATCACCTTCCACAGTTGTGTCAAAACTTGAAGAGATAGCACAGATAGACGGTAGATTTAAGGTCCTGAAGAAAAACTGGATTGTTAGATTGGAGGGATGCAAGGCAGGGCCTAAAGGACAACTCAGTATAGATGCAGAAATTTTTGAAGTTACATCTTCCTTTCATATTGTTGAGGTGAAGAAAATTGCTGGAGACACATTGGAATATAGCAAGTTCTGGGAACAATGCCTCAAGCCTTCTCTAAATGAAATAGTTTGGGCTTGGCAAGGATATGAGCAACAGTAA 1341 0.4236 MENKTTILMQRYELGRFLGQGNFAKVYHARNLKTGQSVAIKVLNKEMIMRVGLKEQIKREISVMRLMKHPNIVQLYEVMASKTKIYFAMEYVKGGELFNKVSRGRLGEDVARKYFQQLIEAVDHCHSRGVYHRDLKPENLLLDENGDLKVSDFGLSALLEHRKNDGLLHTTCGTPAYVAPEVIRKKGYDGAKADIWSCGVILYVLLAGFLPFNDKNLMEMYRKIARADFKFPQWFRSDVKRLLYRILDPNPRTRVSIAKIMQSSWFRKGYKQIEAPLLPPLSPRGEDVSDVQDAFDSSSSDGGSASDKEEGPINPYCFNAFDLISLSSGFDLSGLFENDKSERQQAIFTTKKSPSTVVSKLEEIAQIDGRFKVLKKNWIVRLEGCKAGPKGQLSIDAEIFEVTSSFHIVEVKKIAGDTLEYSKFWEQCLKPSLNEIVWAWQGYEQQ 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi295g00075 446 FunFam Non-specific serine/threonine protein kinase 2 306 - -
Sebi295g00075 446 MobiDBLite consensus disorder prediction 279 311 - -
Sebi295g00075 446 CDD STKc_SnRK3 11 265 - -
Sebi295g00075 446 CDD CIPK_C 319 434 - -
Sebi295g00075 446 ProSiteProfiles NAF domain profile. 313 337 IPR018451 GO:0007165
Sebi295g00075 446 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi295g00075 446 Gene3D Transferase(Phosphotransferase) domain 1 2 298 - -
Sebi295g00075 446 SUPERFAMILY Protein kinase-like (PK-like) 8 289 IPR011009 -
Sebi295g00075 446 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Sebi295g00075 446 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi295g00075 446 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi295g00075 446 FunFam Non-specific serine/threonine protein kinase 3 91 - -
Sebi295g00075 446 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 3 427 - -
Sebi295g00075 446 FunFam Non-specific serine/threonine protein kinase 313 438 - -
Sebi295g00075 446 Pfam NAF domain 316 373 IPR004041 GO:0007165
Sebi295g00075 446 Gene3D Kinase associated domain 1, KA1 313 439 - -
Sebi295g00075 446 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi295g00075 Sebi-Chr295 897309 898649 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi295g00075 1 442 CBL-interacting serine-threonine protein kinases AT5G45820 64.334 0.0 587
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Sebi295g00075 Pkinase 2.6e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi295g00075 K07198 - gmx:100807927 702.975