Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi295g00056 ATGGAGAAGGGAGAACTAGTGAAATGCCCTGCTACGATAGGGCAGAAAAATATTTGTGAGGCCAAAGCTTTAGCAGCTTTGAAAAGCCATAGCGAAGCAGAGAAGAGGAGAAGGAATAGAATTAATGGTCATCTTGCAAAACTCCGTGGTCTTGTGCCCTGCACTGCAAAGATGGATAAAGCCACATTACTAGCTGAAGTTATTAGCCAAGTGAAGGAATTGAAAAAGAATGCAGCTGAATCAAGCAAAGGTTTTCTAATCCCAATGGATGCTGATGAAGTGAAAGTTGAACCATGTGATGATGGAGGAGCAGATGGATCAGTGCCTTATAGGGCAACTGTCTGCTGTGATTACCGACCTGATCTACTATCTGAGCTAAGACAAACTCTTGATGCCCTTCAACTACAATTGGTGAGAACAGAACTATCAACTTTGGGAGACAGGGTAAAGAATGTATTTGTCTATAGCTGCTGCAAAGGGGACATTAATGATATTGAGGCATGTCAACTTATTGCAAGTACTGTTCACCAGGCACTGAGTTCTGTACTGGATAAGCCTTCTAGCTCACTGGATCATTACTCTCTAAGAGAGTCATATCCTTGCAAGCAGCGAACATCTACTTTCTCATGCAACCATGAATCTTGTTCATGTTGA 654 0.422 MEKGELVKCPATIGQKNICEAKALAALKSHSEAEKRRRNRINGHLAKLRGLVPCTAKMDKATLLAEVISQVKELKKNAAESSKGFLIPMDADEVKVEPCDDGGADGSVPYRATVCCDYRPDLLSELRQTLDALQLQLVRTELSTLGDRVKNVFVYSCCKGDINDIEACQLIASTVHQALSSVLDKPSSSLDHYSLRESYPCKQRTSTFSCNHESCSC 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi295g00056 217 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 25 74 IPR011598 GO:0046983
Sebi295g00056 217 Coils Coil 123 143 - -
Sebi295g00056 217 PANTHER TRANSCRIPTION FACTOR BHLH30 15 206 IPR045847 GO:0003700|GO:0006355
Sebi295g00056 217 Pfam Helix-loop-helix DNA-binding domain 29 74 IPR011598 GO:0046983
Sebi295g00056 217 CDD bHLH_AtAIG1_like 20 98 - -
Sebi295g00056 217 SMART finulus 31 80 IPR011598 GO:0046983
Sebi295g00056 217 CDD ACT_UUR-ACR-like 113 179 - -
Sebi295g00056 217 Gene3D - 20 84 IPR036638 GO:0046983
Sebi295g00056 217 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 29 79 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi295g00056 Sebi-Chr295 618524 621565 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi295g00056 3 185 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 44.022 6.38e-35 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi295g00056 HLH 4.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi295g00056 - - gmx:100804756 304.679