Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi295g00055 ATGTCAACTTCTTCATCATCATCCTCTTCTTCTATTTGGGTATTGTCTAACATAAAGCTTCAGTTCTTTGCCCGCATCAGGCGGTTTCTCCAATCCAAAGCAACCCGAAAGCGCTGCGACCCCTCTGATCGATTTGACATAGCAAAAAGCAGAGCAGAGCAGAGCATCAAGGTTGAAAATATTGAAACAGTTCAAGCTATGGAGAAGCATAAGGAAGAGGAGGAAGAGCCTGCGATCCTGTTGCAGAGGACTGTGAAGATGCTTCACTTTGGGAGCTGGGAAGAGAAGGAGGTGGCAGCAAAGGAGATTGAAAGGTTAGCTAAAGAAGATGTCAAGGTTAGAAAGTTGATGACAGAACTTGGGGTGGTGCCGGTGTTGGTATCTATGGTGGCGTCACAGGTGGCTAGTCGCCGGCGAGCAGGGTTGACGGCGTTGATCCACCTAGCTGATGGAACTTACACATTGATGAATATATACAAAGTGGTTGTTGTTGGCTTGGCGGGTTTGGATCATGACTCCACAGTAACCACTAACCAAAGTGTTGAACATTTCAAACTGAGGCAAAGCCAATCCATGGATGGAGGGTGCATTGTGCAAGGCCTCGCTTTTAGAGCTAGGAACAAGGCTTTGATAGTGGAGGCAGGAATATTGTCCAAGCTGCCTAAGACAATTGACTTTGTAGATGAATCAACAATGAGTGAGTTTGCAGAGTTGCTTTTATCATTGTCATCTCTTGCAAACACCCAATTCCCCTTTACTTCATTAGACTTTCTACCATTACTTAGACAAATTCTTGAGACAGGCTCAAGTAATTTTGATGCCAAAGGGTCATGTTTGGGAGCCTTATACAACCTATCAACTGTGCTAGAGAATGCAGGCCCTTTGGTTTCTAGTGGGGTAGTCCCTACCCTCTTGGAATTGTCCTTAGTGAAAGAAATTTCAGAGAAGGCACTTGCAACTCTTGGGAACTTGTTGGTGACTTCCATGGGAAAGAAAGAAATAGAGAACAGCTCAATGGTGCCAAAAAGCTTTATTGAGATCTTGTCATGGGAAGACAAACCCAAATGCCAAGAGTTGTCAGTTTATATTTTGATGATTCTGGCTCATCAAAGCTCATCACAAAGAGAGAAAATGGCACAAGCTGGGATTGTTCCTATGCTTCTTGAAGTGGTTTTATTGGGGAGCCCTTTAGCTCAGAAGAGAGCACAGAAACTATTGCAATGGTTTAAGGATGAAAGGCAAACAAAGATGGGGCCACATTCAGGTCCACAAACACCAAGATTTGCAATGGGTTCACCTGTTAATCAAAGAGATGCAAAAGAAGGAAAGAAATTGATGAAGAGTTTGGTGAAGCAAAGCCTACATAGGAATATGGAAATGATAACACAGAGGGCAAATGCAGCTGGGGAGTCTTCTAAACTGAAGTCTTTGGTCATCAGCACAAGTTCCAAGAGTTTACCTTACTAA 1467 0.4356 MSTSSSSSSSSIWVLSNIKLQFFARIRRFLQSKATRKRCDPSDRFDIAKSRAEQSIKVENIETVQAMEKHKEEEEEPAILLQRTVKMLHFGSWEEKEVAAKEIERLAKEDVKVRKLMTELGVVPVLVSMVASQVASRRRAGLTALIHLADGTYTLMNIYKVVVVGLAGLDHDSTVTTNQSVEHFKLRQSQSMDGGCIVQGLAFRARNKALIVEAGILSKLPKTIDFVDESTMSEFAELLLSLSSLANTQFPFTSLDFLPLLRQILETGSSNFDAKGSCLGALYNLSTVLENAGPLVSSGVVPTLLELSLVKEISEKALATLGNLLVTSMGKKEIENSSMVPKSFIEILSWEDKPKCQELSVYILMILAHQSSSQREKMAQAGIVPMLLEVVLLGSPLAQKRAQKLLQWFKDERQTKMGPHSGPQTPRFAMGSPVNQRDAKEGKKLMKSLVKQSLHRNMEMITQRANAAGESSKLKSLVISTSSKSLPY 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi295g00055 488 Gene3D - 50 467 IPR011989 -
Sebi295g00055 488 MobiDBLite consensus disorder prediction 415 441 - -
Sebi295g00055 488 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 206 488 - -
Sebi295g00055 488 SMART arm_5 245 287 IPR000225 GO:0005515
Sebi295g00055 488 SMART arm_5 288 326 IPR000225 GO:0005515
Sebi295g00055 488 SMART arm_5 110 150 IPR000225 GO:0005515
Sebi295g00055 488 SMART arm_5 204 244 IPR000225 GO:0005515
Sebi295g00055 488 SUPERFAMILY ARM repeat 80 409 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi295g00055 Sebi-Chr295 601098 603922 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi295g00055 206 426 U-box Gene Family AT1G67530 33.929 2.19e-17 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi295g00055 - - gmx:100813828 662.914