Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi295g00026 ATGAATTTCTATGTCCAAACTTCAAAAGCAGTTCCAAGCTTTTTGCTTAGGCTTCTCCTATTCCATTGCCTTATAGGAGCCCAGGCAGCTCAAAATACAAGTGTTGGTGTGGTCATTGATGTCAATTCTGAAACGGGAAAACAACAAAGAAGAGCCATGGAAATTGCAGCTCAAAATTTCAATAATCATTCTAACACTCAAAACATAGTCCTCTTCTTCCGTGACTCTGGTACAAACCCATTACAAGCAGCTTCAGCTGCTGAAGAATTAATTACTAAGGAGAAAGTTAAAGTCATTATTGGCATGGAGACATGGCAAGAAGCAGCTCTGGTTGCTGACTTAGGAACCAAAGCTCAAGTACCAATTATTTCATTTTCTGCTCCTCCAGTGGTCCCTCCATTAATGCAACTTCGTTGGCCTTTCTTGATTCAAATGGCTAAAAATCAGGCTGCACACTTGAACTGCATAGCAGATATTATCCATGCCTACAGCTGGCAGAAGGTTATAGCTATATATGAAGATAACCCTTATAGTGGTGATTCTGGAATGTTAAGCCTCTTTTCTGAGGCTCTCCAAAAGGTTAACTCCCAGATTGAGTACCGATTAGTTCTTCCATCGTTCACTTCTTTATCTGATCCAAAAGGGGCTGTTCTTGATGAATTGCTGAAGTTGTTGCCACTTAAATCTCGTGTTTTTATTGTACTTCAAGCATCATTACCTATGGTGACCCATTTGTTTAGAGAAGCTAAGAAAGTTGGATTCTTGGAGAAAGACTCAGCATGGATTATCAATGAAGGGATTACAAGTATGTTGGACTCTGTCAATAAATCTGTTTTATCCTCTATGCAAGGTACTTTGGGAATCAAAACCTACTATTCTACAAGTTCTAGTGCTTATATTCAGTTGCAGGAAAACTTCAAAGCTAAGCATACAGAAACAGTTGGGTCTAAACCAGGATCAGATGCCCTACTAGCTTATGATAGCATCACAGTTGTCACAAAGGCCTTGGAGAAAATGAATACCAATTCTAGTAGCTCAAAGGTGTTCTTGGAGGAAATGTTGTCAATGTCAGCCAATTTTAATGAAGAGAGAAATCTATCGGACATTCCAGTATTGAGAGTTATAAACGTGGTTCATGAGAATTACATGGAATTAGACTTTTGGACCCCAAAGTTGAAGTTTGCTGGATCTCTTGAAATACTGAAAGACAGAGAGAAAAGAGGTGATCATGCTATAAAACACTTAACTGGCTTAGTGGTTTGGCCAGGAGGCCTAAGTTCTGTGGATCCTCAACCTCCTAATGGATGGAGAGTACCTACCAATGAAAACCCTTTAAAAGTTGCAATTCCTATGAACCCTGCTTTTGATAGTTTTTTAAAGAAAGACTCTCCGAATCATTATAATGGTTTTTGTATTGCACTTTTCCATGCAGTCAGAGAAATTCTGAGTGACAAGTATTTTGGTCTGCCTTATGTGTTTTACCCCTTCAATGAATCCTATGATAGTCTTCTACTGAAAGTCATAAATGAGTCCCATGATGCTATTGTAGGAGATGTAACAATACTTTCCAACCGATCAAAGGATGTGTCGTTCACTCAACCATACACTGAGTCGGGCTTATCACTCATATTTCCAGCAGAGACTGACGGGTCAGCATGGTTGTTTACGAAACCATTCAGCTGGGAAATGTGGATTGCAACTATTGCCATCCTCATCTACACAACGTTCATCATTTGGTTCCTGGAGCATCACCTCAACCCAGATTTTGGGCGTGGATCGTTGAAAACTCAGATCAGCACCTCACTTTGGTTTGCACTTAATTCTCTATATTTTGCTCATACGATCAGCAAGTGTATTCCTTATAATTTGAAACTTGTTGAGGAGAACATAAACAGAAACTCTGCACGAGTAGTAGTTGGCGTATGGTTATTTCTTGTGTTTGTTCTAACCTCAAGCTACACTGCAAGCCTTTCTTCATTGCTTACTGTCAAACGGTTGAAGTCTGGAAGAGACATTGAGTGGCTTAAACAAAACAGCTTATCAGTTGGTTGTGATAACAGCAGTGCCTTTGTAAAAAACTACTTGGTCAACGTGTATAATTTCAGTCCACAGCAAGTAGTAGAGGTTGATGGAGAACATGACATTGTGGATAAATTCAAGAACAAAAGAATTTCTGCTCTCTTTCTTGAGACCCCATATGAGAAGGTATTCCAAAAAGGGTCTCCCATGGCAAAAGACTTCTCTGAAGCCATTTTAGAACTAGCAGAAAATGGAAAACTAAAAGCTTTGGAAGAGCAATGGTTGGCACCTTCCAAAGAATGTTCAAACAACTCAACATCTCCGGAGACTGAGAGCCTGACTCTAGACAAGTTTTGGGGTCTATATATCATATGTGCTGCCACTTCCACCATCTGCTTATTGCGAGCCTTATGGAAGAATTACCTCCATAACCGTAACCATTGCCATCATGAAGAGGGAGTTCAAGTTCAAGTTCAAGATCAAGGGAATGTAACCGCTGGTGATAATAGTGTTTGGAAGAAGCCATTGAGAATGAACACAGGCTTTTACAATGGGAATCCCAAAACTATAAATAGAGCTGCAACTTTTGGTGGAAGTAGAACACAGAGTTTACGTCGTCGAAATTCTTCAAAGTGGCCGAGTATAAGCTTTTCTGATGAACTCAGTCATCAACATCGCTCCAAATCAACTGTCATAGAAATAATGTTAAACAAGTCTAAGATTGGTTGCGATGGTGACTCGTTTGTTAGGTCATTCCTAGAGAAAGTAGAAAGGTTCAAGCCGGAGAACATCATAAACATTACTGATGAATACAAGTTTGATGATGCATTCGCAAATAACAGCATAGCAGCTGCCTTTCTTGAACTCCCATATGAAAAAGTATTCATTAGTGAATACTGCAGGAGATACACTGGCTCCACTCCCAGAACTAGATTTGGAGGATTGGGCTTTATGTTCCAGAAAGGCTCGCCGTTGGCCAGAGATGTTTCTAAAGCTATATTGCATCTCTCAGAAAAGGCAGAGCTGAAGAGATTGGAAGAAAAGTGGTTGATTAACTCACAGGATTGCGCCAACAATATAACCTCTCCCAACAATACTGAAAGTTTGAAGCTTAGAAGCTTATGGGTTCTGTATGTTATCTCTGGTGGCACTTCGACCATTTGTCTGCTACTATCAACCATTCAGTGTCTAAAATCCAGTCAGCAATGTGAAGACGTTCTGCTAGAAGGCAATGGCACACAAAGTGATGAAAGGGCATGGAAAAAGGTGACTACATTTGCAAAGAAGATTTATAGCAAAAAGCTCAATAATTCAAGCAAGGTACAGGATGTAACCGATTGTTCTTCAATATCGGATTGTGTGAGCACCACTGATACATCTGAACATCAACAGGAAATGGCTTTTCCAATACCTGGAATCTTAATGCTGCCTTCTCCACCACCAGAGGTACAGATGACAACACGTGATGTAGGAACCAAGGAACCACATGTTGTTTTTAGGACAGAATAA 3528 0.4002 MNFYVQTSKAVPSFLLRLLLFHCLIGAQAAQNTSVGVVIDVNSETGKQQRRAMEIAAQNFNNHSNTQNIVLFFRDSGTNPLQAASAAEELITKEKVKVIIGMETWQEAALVADLGTKAQVPIISFSAPPVVPPLMQLRWPFLIQMAKNQAAHLNCIADIIHAYSWQKVIAIYEDNPYSGDSGMLSLFSEALQKVNSQIEYRLVLPSFTSLSDPKGAVLDELLKLLPLKSRVFIVLQASLPMVTHLFREAKKVGFLEKDSAWIINEGITSMLDSVNKSVLSSMQGTLGIKTYYSTSSSAYIQLQENFKAKHTETVGSKPGSDALLAYDSITVVTKALEKMNTNSSSSKVFLEEMLSMSANFNEERNLSDIPVLRVINVVHENYMELDFWTPKLKFAGSLEILKDREKRGDHAIKHLTGLVVWPGGLSSVDPQPPNGWRVPTNENPLKVAIPMNPAFDSFLKKDSPNHYNGFCIALFHAVREILSDKYFGLPYVFYPFNESYDSLLLKVINESHDAIVGDVTILSNRSKDVSFTQPYTESGLSLIFPAETDGSAWLFTKPFSWEMWIATIAILIYTTFIIWFLEHHLNPDFGRGSLKTQISTSLWFALNSLYFAHTISKCIPYNLKLVEENINRNSARVVVGVWLFLVFVLTSSYTASLSSLLTVKRLKSGRDIEWLKQNSLSVGCDNSSAFVKNYLVNVYNFSPQQVVEVDGEHDIVDKFKNKRISALFLETPYEKVFQKGSPMAKDFSEAILELAENGKLKALEEQWLAPSKECSNNSTSPETESLTLDKFWGLYIICAATSTICLLRALWKNYLHNRNHCHHEEGVQVQVQDQGNVTAGDNSVWKKPLRMNTGFYNGNPKTINRAATFGGSRTQSLRRRNSSKWPSISFSDELSHQHRSKSTVIEIMLNKSKIGCDGDSFVRSFLEKVERFKPENIINITDEYKFDDAFANNSIAAAFLELPYEKVFISEYCRRYTGSTPRTRFGGLGFMFQKGSPLARDVSKAILHLSEKAELKRLEEKWLINSQDCANNITSPNNTESLKLRSLWVLYVISGGTSTICLLLSTIQCLKSSQQCEDVLLEGNGTQSDERAWKKVTTFAKKIYSKKLNNSSKVQDVTDCSSISDCVSTTDTSEHQQEMAFPIPGILMLPSPPPEVQMTTRDVGTKEPHVVFRTE 1175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi295g00026 1175 Gene3D - 439 552 - -
Sebi295g00026 1175 SUPERFAMILY Periplasmic binding protein-like II 416 768 - -
Sebi295g00026 1175 SUPERFAMILY Periplasmic binding protein-like II 913 1024 - -
Sebi295g00026 1175 FunFam Glutamate receptor 552 704 - -
Sebi295g00026 1175 SMART GluR_14 444 1025 IPR001320 GO:0015276|GO:0016020
Sebi295g00026 1175 Gene3D - 989 1022 - -
Sebi295g00026 1175 Gene3D - 152 314 - -
Sebi295g00026 1175 CDD PBP1_GABAb_receptor_plant 34 394 IPR044440 -
Sebi295g00026 1175 Gene3D - 28 151 - -
Sebi295g00026 1175 SUPERFAMILY Periplasmic binding protein-like I 25 423 IPR028082 -
Sebi295g00026 1175 Pfam Bacterial extracellular solute-binding proteins, family 3 457 733 IPR001638 -
Sebi295g00026 1175 Pfam Receptor family ligand binding region 50 347 IPR001828 -
Sebi295g00026 1175 Gene3D - 887 988 - -
Sebi295g00026 1175 Pfam Ligand-gated ion channel 734 800 IPR001320 GO:0015276|GO:0016020
Sebi295g00026 1175 Gene3D - 712 776 - -
Sebi295g00026 1175 FunFam Glutamate receptor 152 318 - -
Sebi295g00026 1175 Gene3D - 553 702 - -
Sebi295g00026 1175 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 34 832 IPR015683 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi295g00026 Sebi-Chr295 348354 356849 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi295g00026 13 825 Ion Channels AT2G29120 30.259 1.16e-110 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi295g00026 - - gmx:100818078 1253.04