LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi295g00018	ATGGACCAACGACATAAAGTGTTTCTTCTTCTGCTGCCTCTTTTCCAAGTTCTGCTTGTTGCAGCACAGTCGCAGACAGCAAGCCAAGACTTTTCTGCCCTAACATCTCTCACACAATCCTGGAATAACAAACCATCAAGTTGGGTGGGAATAGATCCCTGTGGCAGTAATTGGGATGGAATTCGTTGTACCAACTCTAGAATTACCGAATTGAAACTATCAGGCTTGAATTTGGAGGGCCAACTGTCTTCGGCAATCCAGTCTTTAACTGAACTAGACACTCTGGATCTTTCTTACAACACGGGCTTGACAGGAACAATTCCACGAGAAATTGGGAATTTGCAAAAGCTAAAGTCCCTAGCATTGGTTGGTTGTGGTTTCTCTGGTCCTATTCCAGATTCGATAGGATCGTTAAAGCAGCTGACCTTTCTAGCACTGAATTCTAACAGATTCAATGGAAATATTCCACGGTCTCTGGGCAATCTATCCAATATTGATTGGCTAGATCTTGCAGATAACCAGCTTGAAGGGCCTATTCCTGTCTCTGATGACCAAGGACGACCAGGTCTTGACCTGCTCCTTAAGGCCAAGCACTTTCATATGGGGAACAATAAGCTCTCTGGTACAATACCACCAAAACTTTTTAACTCCAGCATGAAACTAGAACACGTGCTTTTTGACAGCAACAAACTAACGGGGAGTATTCCTAGAACCCTTAGTCTTGTGAGCACATTGGAGGTGGTGCGTTTTGATAGGAATCAATTAAGCGGAGGAGTGCCTTCAAACTTGAACAATCTCGGAAAACTTAGCGAGCTCTATTTATCTCACAATCAAATGGATGGCTCTCTGCCGGATCTTACTGGAATGAATAGTCTCACCTATGTGGATCTGAGCGACAATAATTTCAATTCTTCTAATATTCCTTCATGGGTTACAAGTCTGCCAGATCTGACAACAGCGATACTGAAGGACAACAAGCTCAGTGGCACATTAAATCTTAGCAATGGCTACAGCAACAGTCTGCAACTCATTGATTTGGAGAATAATGATATAACCGACCTCAAGCCTAGAAACCAAAAATTTACTTTTGATTTGAGACTGGCTAATAACGAAATTTGTCTTGAAAATGGAGCTTCTGATGAGAGTTACTGCAAAGTGCACCAAATCATTCCCTCATATTCAACCCCACCAAATAATTGTGCAGCTCCATCTTGCAGTGACAGTCAGACTTTAAGCCCCAACTGTAAATGTGCATTTCCCTATACTGGAACTCTGTCATCCAGAGCTGTTAGTTTCTCAAACTATAGTAACTCAAGTTACTACAGACAAATTGAGCAGACTCTGCTGGACACTTTTAAAAAACAAAATGTTGCTGTGGATTCAGTTTCTCTTAGTAATCCCAGGAAGAATTCAACTAATGATAATTTTCAGTTGACTCTGGAGGTCTTCCCATCTCAAACTGACCGTTTCAATAGCACTGGAGTTTTAACCATTTCTTTTCTGCTTAGCAACCAAATTTACAAACCCCCAGCATTTTTCACCCCTTACGTCTTCAACGGTCTTAGTTATGAACACTTTGGAGGAGAACCTAAAGGATCAAAGTCAAAAAATACAGGGGTTATAGTTGGTGCAGTACTTGCTGTAGTGGTGTTTCTTGTACTAGCACTCCTTGCAGGGATATATGCCATCCGCCAAAAAAGAAGAGCAAAAAGATCTGCAGAGTTGAACCCTTTTGTAAATTGGGAACAGAACAAGAATAGTGGCACTGCTCCTCAGTTGAAAGGAGCACGGTGGTTTTCTTTTGAAGAGCTAAAAAAATACACCAATAACTTCTCAGAAGCCAATACTATTGGATCTGGCGGCTATGGAAAGGTTTACCAAGGTGTTCTTCCCTCTGGGGAGTTGGTTGCCATCAAACGGGCTGCACAAGAATCTATGCAGGGTGCTGTTGAGTTTAAAACTGAGATTGAACTTCTATCAAGGGTCCATCATAAGAATCTTGTTAGTCTTGTGGGTTTCTGTTTTGAGAAGGGTGAACAAATGCTTGTGTATGAGTACATTCCAAATGGCACTTTAATGGATAGTCTTTCAGGAAAGTCTGGGATATGGATGGATTGGATAAGGAGGCTGAAAGTAACACTGGGTGCTGCCAGGGGTCTGGCCTATCTACATGAACTTGCTAACCCACCAATTATACACAGGGACATCAAATCAGGCAATATCCTACTTGATAATCACCTCAATGCAAAAGTTGCCGATTTTGGTCTCTCCAAACTTCTTGTTGATAGTGACAGGGGCCATGTCACTACTCAAGTCAAAGGAACAATGGGCTACTTGGATCCTGAATATTACATGACCCAACAGTTGACTGAAAAGAGTGATGTGTACAGCTTTGGAGTGTTAATGCTGGAACTAGTGACAGCAAGAAGGCCAATAGAACAAGGAAAGTATATTGTAAGAGAGGTAATGAGGGTAATGGATACATCAAAAGATTTATACAACCTTCATTCCATTATAGATCCAACTATGATGAAAGTGACAAGCCCAAAAGGTTTAGAAAGGTTTGTGGGACTGGCAATGAGGTGTGTCAAAGAATATGCAGCTGAGAGGCCTACAATGGCTGAGGTTGTGAAAGAGATTGAAAACATAATTGAGCTTGTTGGAGTGAACCCCAATGCTGAATCAGCTTCAACATCAGAAACTTATGAGGAAGCAACCGGAGGGAATGTCCAACATCCTTATGTCAATAGACTCAATAATGATTTTGAATATAGTGCAATGTTTCCATCAACAAAGGTAGAACCTCAATGA	2811	0.4148	MDQRHKVFLLLLPLFQVLLVAAQSQTASQDFSALTSLTQSWNNKPSSWVGIDPCGSNWDGIRCTNSRITELKLSGLNLEGQLSSAIQSLTELDTLDLSYNTGLTGTIPREIGNLQKLKSLALVGCGFSGPIPDSIGSLKQLTFLALNSNRFNGNIPRSLGNLSNIDWLDLADNQLEGPIPVSDDQGRPGLDLLLKAKHFHMGNNKLSGTIPPKLFNSSMKLEHVLFDSNKLTGSIPRTLSLVSTLEVVRFDRNQLSGGVPSNLNNLGKLSELYLSHNQMDGSLPDLTGMNSLTYVDLSDNNFNSSNIPSWVTSLPDLTTAILKDNKLSGTLNLSNGYSNSLQLIDLENNDITDLKPRNQKFTFDLRLANNEICLENGASDESYCKVHQIIPSYSTPPNNCAAPSCSDSQTLSPNCKCAFPYTGTLSSRAVSFSNYSNSSYYRQIEQTLLDTFKKQNVAVDSVSLSNPRKNSTNDNFQLTLEVFPSQTDRFNSTGVLTISFLLSNQIYKPPAFFTPYVFNGLSYEHFGGEPKGSKSKNTGVIVGAVLAVVVFLVLALLAGIYAIRQKRRAKRSAELNPFVNWEQNKNSGTAPQLKGARWFSFEELKKYTNNFSEANTIGSGGYGKVYQGVLPSGELVAIKRAAQESMQGAVEFKTEIELLSRVHHKNLVSLVGFCFEKGEQMLVYEYIPNGTLMDSLSGKSGIWMDWIRRLKVTLGAARGLAYLHELANPPIIHRDIKSGNILLDNHLNAKVADFGLSKLLVDSDRGHVTTQVKGTMGYLDPEYYMTQQLTEKSDVYSFGVLMLELVTARRPIEQGKYIVREVMRVMDTSKDLYNLHSIIDPTMMKVTSPKGLERFVGLAMRCVKEYAAERPTMAEVVKEIENIIELVGVNPNAESASTSETYEEATGGNVQHPYVNRLNNDFEYSAMFPSTKVEPQ	936

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi295g00018	936	FunFam	Leucine-rich repeat family protein	29	184	-	-
	Sebi295g00018	936	ProSitePatterns	Protein kinases ATP-binding region signature.	617	639	IPR017441	GO:0005524
	Sebi295g00018	936	Pfam	Protein kinase domain	612	878	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi295g00018	936	FunFam	LRR receptor-like serine/threonine-protein kinase HSL2	687	896	-	-
	Sebi295g00018	936	ProSiteProfiles	Protein kinase domain profile.	611	884	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi295g00018	936	FunFam	Leucine-rich repeat protein kinase family protein	579	686	-	-
	Sebi295g00018	936	Gene3D	Phosphorylase Kinase; domain 1	581	686	-	-
	Sebi295g00018	936	PANTHER	RECEPTOR-LIKE PROTEIN 55	34	883	-	-
	Sebi295g00018	936	SUPERFAMILY	Protein kinase-like (PK-like)	590	879	IPR011009	-
	Sebi295g00018	936	Gene3D	Transferase(Phosphotransferase) domain 1	687	902	-	-
	Sebi295g00018	936	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	731	743	IPR008271	GO:0004672\|GO:0006468
	Sebi295g00018	936	Pfam	Leucine rich repeat N-terminal domain	28	63	IPR013210	-
	Sebi295g00018	936	Gene3D	Ribonuclease Inhibitor	188	395	IPR032675	-
	Sebi295g00018	936	SMART	serkin_6	611	884	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi295g00018	936	FunFam	Leucine-rich repeat protein kinase family protein	186	285	-	-
	Sebi295g00018	936	SUPERFAMILY	L domain-like	34	362	-	-
	Sebi295g00018	936	Gene3D	Ribonuclease Inhibitor	25	187	IPR032675	-
	Sebi295g00018	936	CDD	STKc_IRAK	617	883	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi295g00018	Sebi-Chr295	251552	258035	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi295g00018	8	936	Receptor kinase-like Gene Family	AT5G49760	53.927	0.0	958

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-VIII-1	Sebi295g00018		Pkinase	3.7e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi295g00018	-		-	gmx:100786172	1457.58