Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi294g00070 ATGGCCGGAAGTGTTGATGTTCTAGCTCAAGATTCAAGTATCAATGGAGCAATATTGAAACTGTTGGCTGAGGATTTCAATCACAAGGTGTTTATCAAAGATCTTGCACCCCCAACAATGGGAGAGAATGGCATTGTCAAAGGGGAGGCTCATCAGAATCAGAAAAGTACAGAGAAAAGTGAAGGAAAGATAGTGCTGGGAAGAAATATTCATACCATGTGCCTAGAAGTGAAGGAGCCAGATAGTGATGAAGAGGTTACTGGGGAAAGAGAAGCTTATATGGCAAGTGTGTTAGCTAAATACAAAAGATCTCTCACAGAAAGGACCAAGTATCATTTAGGATACCCCTATAATTTGGATTTTGACTATGGTGCACTCTCTCAACTTCAGCACTTTTCAATAAACAACCTAGGAGATCCATTTATTGAAAGCAATTATGGTGTTCACTCAAGGCAATTTGAAGTTGGTGTTTTGGATTGGTTTGCTCGGTTGTGGGAACTAGAGAAAAATCAGTACTGGGGCTATATAACAAATTGTGGCACTGAAGGCAATCTCCATGGCATCCTAGTTGGAAGAGAGGTCTTCCCAGATGGGATTTTATATGCCTCACAAGAGTCACATTATTCTGTTTTTAAAAGCTGCTCGTATGTACAGAATGCAATGTGTGAAGGTACAACTGTGAAAGGAGCTGTGGATGATCTTGATGTAGTTATAAAGAAACTTGAAGAAGCAGGATTTTCTCATGACAGGTTCTACATACATTGTGATGGTGCTTTGTTTGGTCTCATGATTCCTTTTGTCAAACGTGCTCCAAAAGTTTCTTTTAAGAAACCTATTGGTAGTGTTAGTGTTTCTGGCCACAAATTTGTAGGGTGCCCCATGCCTTGTGGAGTGCAGATAACAAGATTGGAGCATATTAATGCACTTTCCAGGAATGTAGAATACCTTGCTTCAAGGGATGCTACAATAATGGGCAGTAGGAATGGCCATGCTCCCATATTCCTTTGGTATAGTTTAAACAGGAAAGGATACAGAGGTTTTCAAAAGGAAGTGCAAAAATGCTTGAGGAATGCACACTACTTCAAAGATCGCCTTGTAGATGCTGGGATTGGAGCAATGCTTAATGAGTTGAGTAGCACTGTTGTATTTGAGAGGCCACATGATGAGGAGTTTGTGCATAAGTGGCAATTGGCATGCCAAGGGAACATTGCACATGTTGTAGTGATGCCAAATGTCACCATAGAGAAGCTTGATGATTTTCTAAATGAACTTGTGCACAAGCGTGCTGAGTGGTTTCAAGATGGGAAGTGTCAACCTTATTGTATAGCATCTGCTGTTGGTGTAAAAAATTGTGTTTGTGCTTTGCATAGATGA 1374 0.4047 MAGSVDVLAQDSSINGAILKLLAEDFNHKVFIKDLAPPTMGENGIVKGEAHQNQKSTEKSEGKIVLGRNIHTMCLEVKEPDSDEEVTGEREAYMASVLAKYKRSLTERTKYHLGYPYNLDFDYGALSQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELEKNQYWGYITNCGTEGNLHGILVGREVFPDGILYASQESHYSVFKSCSYVQNAMCEGTTVKGAVDDLDVVIKKLEEAGFSHDRFYIHCDGALFGLMIPFVKRAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRLEHINALSRNVEYLASRDATIMGSRNGHAPIFLWYSLNRKGYRGFQKEVQKCLRNAHYFKDRLVDAGIGAMLNELSSTVVFERPHDEEFVHKWQLACQGNIAHVVVMPNVTIEKLDDFLNELVHKRAEWFQDGKCQPYCIASAVGVKNCVCALHR 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi294g00070 457 SUPERFAMILY PLP-dependent transferases 108 430 IPR015424 -
Sebi294g00070 457 ProSitePatterns DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 281 302 IPR021115 GO:0016831
Sebi294g00070 457 Gene3D - 126 220 IPR015421 GO:0003824
Sebi294g00070 457 Pfam Pyridoxal-dependent decarboxylase conserved domain 224 376 IPR002129 GO:0016830|GO:0019752|GO:0030170
Sebi294g00070 457 PANTHER - 223 457 - -
Sebi294g00070 457 Gene3D - 221 366 IPR015421 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi294g00070 Sebi-Chr294 1077974 1080074 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi294g00070 218 363 Calmodulin-binding Proteins AT1G65960 27.044 5.13e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi294g00070 K25193 - gmx:100792053 780.015