Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi294g00044 ATGGGAAACATCGAGCGAGTAGTTTCATCTTTCATGGGTTCGTTTAGTCTTTGGGCAATTTTGGTCCTTAAGGTTTCTGGTAATGGCAATGCAGAAAGTGATGCCCTGAATGCATTGAAGACCAACTTGTTTGATCCTAACAGGTTTCTTCAAAGCTGGGATCCTACTCTTGTCAATCCTTGCACATGGTTGCATGTTACTTGCAACAGTGATGAAAGCGTGACCCGTGTTGATCTTGGAAATGCAAACCTTTCGGGTCAACTGGTTTCACAGCTTGGTCTGCTCCCAAATTTGCAACACTTGAAACTTTATAATAATAATATAACTGGGAAAATCCCAAATGAGCTTGGAAATCTGACAAATTTGGTGAGCTTGGATCTTTACTTGAACAAGTTAACAGGTTCCATTCCGGACACATTGGGCAACCTTAAAAAACTACGTGTCCTGCGTCTCAACAATAACAGCTTGTCAGGAAACATTCCTATGTCTTTGACCACTGTCGCTTCACTGCAAGTCCTTGATTTGTCAAACAACAACTTAACAGGAGACGTCCCAGTCAATGGTTCATTTACATTATTTACTCCAGACAGTTTTAACAGTAATCCTCACTTGAATAAAAGATTCATTCCAGCTCCATTGCAACAAACTACTTCAGATGAGGAGGATCCTGATCCTGAACTTTACCTTAGTCAGCTCAAAAGGTTTTCACTGCATGAGCTACGAAGTGCAACAAATAACTTCAAAAATATTCTGGGTAAAGGTGGATCTGGCATGGTTTATAAAGGACACTTAGCAGATGGTTCTCTTGTAGCAGTCAAAAGACTTAAAAAAAAAGGTACCCGAGGTGGGGAACTGCAATTTAAAACTGAAGTTGAAATGATTGGCATGGCTGTGCATCAAAATTTACTTCGGCTGCGTGGTTTTTGCATGACGCGCTCTGAAATGTTGCTTGTGTATCCTCTCTTGATTAATGGAAGTGTAGCATCATGGTTACGAGAGCGTCCAGAATCACAACCACCACTTGACTGGCCAACACGGAAGCGTGTTGCCTTAGGAACTGCTAGGGGGCTTGCTTATTTGCATGATCACTGTCACCCGAAGATTGTTCATCGAGATGTCAAAGCTGCTAATATTTTGTTAGATGAGGAATGTAATGCAGTTGTTGGAGATTTTGGTTTAGCAAAGCTTAAGGATTACAAAGATACTCATGTCACCACTGCTGTATATGGTACAATTGGGCATATAGCGCCAGAGTACTACTCAACTGGAAAGTTTACAGAGAAGGTTGATGTTTTTGGATATGGTGTGATGCTTCTTGAAGTAATAACTGGACAGACAGCTTTTGATCTAGCACGACTTGCTGACAATGATGATGCCAGGTTGCTTCTTTGGGTGAAAGGACTTCTGAAAGAGGAGAGGTTGGAGACATTGGTGGATGCAAATTTACAGGGAAAATATAATGAGGAGGAGGTAAAGCAGATAATCCAAGTGGCCTTGCTATGCACACAAGACTCCCCTTTGGAAAGGCCCAAGATGTCTGAGGTGGTTAGAATGCTAGAGGGTGATGGTTTGGCAGAAAAATGGGATCAATGGCAGAAAGAGGAGATTATCCGACAAGATTTCAACCTCAACTTCACCAAATTACTAAATGCTAATTGGATATTAGACTCAATTTCAAATGTCCCACCAGATGAACTATCTTTATCAGGTCCTAGATGA 1719 0.4136 MGNIERVVSSFMGSFSLWAILVLKVSGNGNAESDALNALKTNLFDPNRFLQSWDPTLVNPCTWLHVTCNSDESVTRVDLGNANLSGQLVSQLGLLPNLQHLKLYNNNITGKIPNELGNLTNLVSLDLYLNKLTGSIPDTLGNLKKLRVLRLNNNSLSGNIPMSLTTVASLQVLDLSNNNLTGDVPVNGSFTLFTPDSFNSNPHLNKRFIPAPLQQTTSDEEDPDPELYLSQLKRFSLHELRSATNNFKNILGKGGSGMVYKGHLADGSLVAVKRLKKKGTRGGELQFKTEVEMIGMAVHQNLLRLRGFCMTRSEMLLVYPLLINGSVASWLRERPESQPPLDWPTRKRVALGTARGLAYLHDHCHPKIVHRDVKAANILLDEECNAVVGDFGLAKLKDYKDTHVTTAVYGTIGHIAPEYYSTGKFTEKVDVFGYGVMLLEVITGQTAFDLARLADNDDARLLLWVKGLLKEERLETLVDANLQGKYNEEEVKQIIQVALLCTQDSPLERPKMSEVVRMLEGDGLAEKWDQWQKEEIIRQDFNLNFTKLLNANWILDSISNVPPDELSLSGPR 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi294g00044 572 ProSitePatterns Protein kinases ATP-binding region signature. 251 273 IPR017441 GO:0005524
Sebi294g00044 572 SUPERFAMILY L domain-like 32 204 - -
Sebi294g00044 572 Gene3D Ribonuclease Inhibitor 29 212 IPR032675 -
Sebi294g00044 572 FunFam Somatic embryogenesis receptor kinase 1 28 218 - -
Sebi294g00044 572 SUPERFAMILY Protein kinase-like (PK-like) 223 520 IPR011009 -
Sebi294g00044 572 ProSiteProfiles Protein kinase domain profile. 245 524 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi294g00044 572 FunFam Somatic embryogenesis receptor kinase 1 216 321 - -
Sebi294g00044 572 SMART serkin_6 245 519 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi294g00044 572 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 18 529 - -
Sebi294g00044 572 ProSiteProfiles Leucine-rich repeat profile. 97 120 IPR001611 GO:0005515
Sebi294g00044 572 Gene3D Transferase(Phosphotransferase) domain 1 322 539 - -
Sebi294g00044 572 Pfam Protein tyrosine and serine/threonine kinase 247 519 IPR001245 GO:0004672|GO:0006468
Sebi294g00044 572 Pfam Leucine rich repeat 121 180 IPR001611 GO:0005515
Sebi294g00044 572 FunFam Somatic embryogenesis receptor-like kinase 1 322 539 - -
Sebi294g00044 572 ProSitePatterns Serine/Threonine protein kinases active-site signature. 368 380 IPR008271 GO:0004672|GO:0006468
Sebi294g00044 572 Pfam Leucine Rich Repeat 97 119 IPR001611 GO:0005515
Sebi294g00044 572 Pfam Leucine rich repeat N-terminal domain 30 69 IPR013210 -
Sebi294g00044 572 Gene3D Phosphorylase Kinase; domain 1 217 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi294g00044 Sebi-Chr294 721879 728059 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi294g00044 27 572 Receptor kinase-like Gene Family AT1G71830 59.641 0.0 667
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Sebi294g00044 PK_Tyr_Ser-Thr 3.9e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi294g00044 K13416 - gmx:100800522 788.104