Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi294g00027 ATGTCTCATTTCGGAAGGTCAGGTCCACCAGACATTTCCGACACTTACTCTCTTCTCGTACTCAACATCACTTTCCGCACAACCGCCGACGACCTGTTCCCTCTCTTTGATAAGTATGGGAAGGTCGTTGATATTTTCATCCCCAAAGATCGAAGGACCGGTGAGTCGAGGGGTTTCGCGTTTGTGCGTTACAAATATGCTGATGAGGCTCAGAAGGCCGTGGATAGGCTCGATGGAAGAATGGTTGATGGTCGTGAAATAACTGTCCAGTTCGCAAAATATGGGCCTAATGCTGAGAGGATTCACAAAGGAAGGATTATTGAATCAGCCCCAAGATCGAAGCGGTCAAGGAGCCGCAGTCCCCGGAAAAGGTATCGTGATGATTACAAAGACAAGGATTACAGGAGGAGAAGTCGCAGCAGAAGTTATGATAGGTATGAACGTGACAGGTACCGAGGGAGAGACAAGGATTATCGTCGCCGAAGCAGGAGCCGTAGTGCCAGTCCTGATTACAAGGGTCGTGGAAGGGGACGCTATGATGATGAGCGTCACAGTAGAAGCCGGAGCAGATCAGTGGATAGCCGCTCCCCTGTACGGCACAGTCCTAGTCCTCGAAGGAGTCCTTCCCCTCAGAGGAGCACTTCCCCTCAAAGGAGCATTTCCCCTAGGAAAAGTCCAAGGGGTGAAAGTCCTGATAATCGTAGCCGTGATGCAAGGTCTCCTACACCACGCAGTGTCTCACCACGTGGTCGCCCTGATGCCTCACGTAGCCCATCCCCTCGAAATTCAAATGGTGATAGTAGTGTAAAGAAAATCTTATCTCACCTAGCGGTTGATTCACCTCCTGAGCAACAACAACAGTTAACTCAAGAAGGTAGTCTCAACCTGACCATCTCCACTTTTAACTCCACAATCTGCAAAGAGAAACAGTGA 933 0.4973 MSHFGRSGPPDISDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEAQKAVDRLDGRMVDGREITVQFAKYGPNAERIHKGRIIESAPRSKRSRSRSPRKRYRDDYKDKDYRRRSRSRSYDRYERDRYRGRDKDYRRRSRSRSASPDYKGRGRGRYDDERHSRSRSRSVDSRSPVRHSPSPRRSPSPQRSTSPQRSISPRKSPRGESPDNRSRDARSPTPRSVSPRGRPDASRSPSPRNSNGDSSVKKILSHLAVDSPPEQQQQLTQEGSLNLTISTFNSTICKEKQ 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi294g00027 310 MobiDBLite consensus disorder prediction 102 291 - -
Sebi294g00027 310 MobiDBLite consensus disorder prediction 122 195 - -
Sebi294g00027 310 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Sebi294g00027 310 Gene3D - 5 105 IPR012677 -
Sebi294g00027 310 MobiDBLite consensus disorder prediction 196 224 - -
Sebi294g00027 310 SMART rrm1_1 17 90 IPR000504 GO:0003723
Sebi294g00027 310 MobiDBLite consensus disorder prediction 225 239 - -
Sebi294g00027 310 SUPERFAMILY RNA-binding domain, RBD 8 101 IPR035979 GO:0003676
Sebi294g00027 310 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 88 IPR000504 GO:0003723
Sebi294g00027 310 SMART rrm2_1 17 90 IPR003954 GO:0003676
Sebi294g00027 310 MobiDBLite consensus disorder prediction 256 270 - -
Sebi294g00027 310 FunFam Serine/arginine-rich splicing factor SC35 4 103 - -
Sebi294g00027 310 CDD RRM_SRSF2_SRSF8 18 90 - -
Sebi294g00027 310 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 14 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi294g00027 Sebi-Chr294 409059 414827 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi294g00027 13 92 Eukaryotic Initiation Factors Gene Family AT3G11400 35.000 5.67e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi294g00027 K12891 - gmx:100778928 344.739