Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi294g00015 ATGTTTCAAATCACACCAGAACCGCCTAGCAGGCCACCAAGTGGTTCACTTTTTCTTTTTGATAGGAAGGTTTTGAGGTACTTCAGAAAAGATGGACACAATTGGAGAAAGAAAAAAGATGGAAAGACTGTGAAGGAAGCTCATGAAAAGTTGAAGGTGGGAAGTATTGATGTGTTACACTGCTACTATGCCCATGGAGAAGAAAATGAAAATTTTCAGAGGCGAAGCTATTGGATGCTTGAACCGGATATGATGCATATAGTATTTGTCCACTACTTGGATGTTAAGGTTAACAAGACCAATGTTGGTGCAAGTTCATTTACGGATGATGTTACATCAGATTCCCAGAAGGGAAGTTCTGTATCTTCTGGCTTTCCCACAAATTATAGTAGTGTGCCTTCTGGAAGTACAGATTCCATGAGCCCAACTAGCACTTTGACATCTTTATGTGAAGATGCTGATTCAGAGGATATTCACCAAGCAAGCTCAGGATTGCACACTTTTCGTGATTCACAAAATATGGGGAATGGTCGGCAGATGGATAAGATTGATGCTCGTTCAAATAGTTCATATCATATGCATCCCTTCTCAGGTGATCATGGACAGTTTTCAATGTCTGGAACAGATTATATCCCATTTGTTCAGGGGGATAAATCTAGACCAAGTGATACTACTACCTATATTGAGGGCCAGAGAGTACATGGCATGGCATCCTGGGACAATGTCCTGGAACAATCTGCAGGATTGCCTACTGATCCTTCTCCTGTATCATCTACTTCCATTCCACCAAGTTCAACTTCAACTGGAAACATCCTTGAACAAGAACATACTGCTCTTACTGAAGAGGCAATGGCCTCTCAGTCTCTCCAATCAAATTGGCAGATTCCTTTCGAAGACAATACAGGAGAATTGCCTAAATGGAGCTTTTCGCAATCATTGAGTATGGAATTCGGATCTGATTATGGCACTGGTTTACTGGGAAGTGAAATTAATGCAAGTTCAGAAATTGGTCCCGACCTTTTCATGTTTAATTGCGAGCCAAAAGATCAGTCTGTGCAGCAAAACTTCTCAAAGCAGCATACAGATGCACAATCTCAGCATGCACTGAAATCTGAGCATGAAGTTCCTGGTGAAGAAAGTATCAACTATGGCTTGACCATGAGGCGTGCATTATTGGATGGAGAGGAGAGCCTGAAAAAGGTTGATAGCTTCTCTAGGTGGATTACTAAAGAACTGGCAGCGGTGGATGATCTGCATATGCAGTCTTCCCCTGGCATTTCATGGAACACAGATGAATGTGGGAACGTGATAGATGATACCTCATTGAACCTGTCCCTATCCCAAGACCAGCTGTTTAGCATAAATGATTTTTCACCTAAATGGGCTTATGCTGAGTCAGAAATTGAGGTGTTGATTATTGGAACATTTTTTAAGAGTCAACATGAGGTGGCAACATGTAACTGGTCCTGTATGTTTGGGGAAGTGGAAGTTCCTGCTGAGGTTTTAGCTAATGGAATTCTGTGCTGTCAAGCTCCACCTCATGAGATTGGACGGGTCCCTTTCTATGTAACATGTTCCAATAGGTTTGCTTGTAGTGAAGTTCGGGAATTTGAATACAAAGTGGGCTTTGCTAAAAATGTAGATTTGGCAGATTTTTTTAACAGTTCAACTGAAATGCTGCTTCATTTGCAACTAGAGGAGTTACTTTCTTTAAACTCAGCGCGCCCTTCAAATGAAGCTTTTGAGGATGATATGGAGAGAAGAAACTTAATTTTTAAGCTTATTTCACTGAAAGAGGAAGAGGAATATTCAAGTAAGGAAGAGCCAACTGGAGAGATGGATATATCAAAACACAAGTTGAAGGCAGATGTGTTTCACAGGCAGCTTAAAGAGAAGCTGTACTCATGGCTTCTTCACAAAGTAACTGAAACCGGTAAAGGGCCACATGTATTAGGTCAGGACGGGCAAGGTGTGTTACATTTAGTTGCTGCTCTTGGTTATGATTGGGCCATAACACCAATTATAACGGCTGGAGTTAATATCAACTTCCGTGATGTGAATGGATGGACAGCTCTACACTGGGCTGCATCCTGTGGCAGAGAGCGAACAGTTGCCATCCTTATCTCCATGGGTGCAGCTGCTGGAGCAGTGACAGATCCATCTCCAGCATTTCCTTCAGGAAGGACACCTGCAGATCTTGCTTCTAGCAACGGCCACAAAGGAATTTCTGGTTTTCTTGCAGAGTCATTATTAACTAGCCACCTCGAATCACTCACAATGGATGATCTAAATAAAGATGGTAGGAAAGAAACTTTTGGAGCGAAAGCAGTGCAGACAGTTTCAGAGAGAATTGCAACACCTGTGCTTTGTGGTGATATACCTGATGCTCTTTGCCTTAAGGATTCTCTTGATGCTGTTCGTAATGCTACACAAGCTGCTGATCGTATACATCAAGTATTCAGAATGCAATCATTTCAGAGGAAGCAGTTAGCTCAGTATGATGATGATGAGTTTGGATTGTCAGATCAGCAAGCTATTTCCCTTCTAGCTTCTAAGACATGCAAATCTGGACAAGGAGAGGGTTTGGCCAATGCTGCTGCAATACAAATACAGAAAAAGTTTCGTGGTTGGACGAAGAGAAAAGAATTCTTGTTCATTCGTCAAAGAGTTGTTAAAATCCAGGCCCATGTAAGAGGTCACCAGGATGCCCTTACTAAGCTCCCCGAACAACCAAGCGATCCTGTGAAAGAGGATGATTATGATTTTCTCAAGGAAGGAAGGAAACAAAGTGAGGCAAGGTTCCAAAAGGCTCTTTCAAGGGTGAAATCCATGGTTCAGTATCCAGAGGCACGGGCTCAATACCGGCGGGTGCTAAATGTGGTAGAGGACTTCCGTCAAACCAAGGCATGTAATTTGAGTTTGGTAAATTCGGAAGAGGCAGTTGATGGTGTGGAGGATTTGATTGATATTGACATGCTTTTAGATGATGAAAATTTTTTACCTATAGCATTCAATTGA 3018 0.4205 MFQITPEPPSRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSIDVLHCYYAHGEENENFQRRSYWMLEPDMMHIVFVHYLDVKVNKTNVGASSFTDDVTSDSQKGSSVSSGFPTNYSSVPSGSTDSMSPTSTLTSLCEDADSEDIHQASSGLHTFRDSQNMGNGRQMDKIDARSNSSYHMHPFSGDHGQFSMSGTDYIPFVQGDKSRPSDTTTYIEGQRVHGMASWDNVLEQSAGLPTDPSPVSSTSIPPSSTSTGNILEQEHTALTEEAMASQSLQSNWQIPFEDNTGELPKWSFSQSLSMEFGSDYGTGLLGSEINASSEIGPDLFMFNCEPKDQSVQQNFSKQHTDAQSQHALKSEHEVPGEESINYGLTMRRALLDGEESLKKVDSFSRWITKELAAVDDLHMQSSPGISWNTDECGNVIDDTSLNLSLSQDQLFSINDFSPKWAYAESEIEVLIIGTFFKSQHEVATCNWSCMFGEVEVPAEVLANGILCCQAPPHEIGRVPFYVTCSNRFACSEVREFEYKVGFAKNVDLADFFNSSTEMLLHLQLEELLSLNSARPSNEAFEDDMERRNLIFKLISLKEEEEYSSKEEPTGEMDISKHKLKADVFHRQLKEKLYSWLLHKVTETGKGPHVLGQDGQGVLHLVAALGYDWAITPIITAGVNINFRDVNGWTALHWAASCGRERTVAILISMGAAAGAVTDPSPAFPSGRTPADLASSNGHKGISGFLAESLLTSHLESLTMDDLNKDGRKETFGAKAVQTVSERIATPVLCGDIPDALCLKDSLDAVRNATQAADRIHQVFRMQSFQRKQLAQYDDDEFGLSDQQAISLLASKTCKSGQGEGLANAAAIQIQKKFRGWTKRKEFLFIRQRVVKIQAHVRGHQDALTKLPEQPSDPVKEDDYDFLKEGRKQSEARFQKALSRVKSMVQYPEARAQYRRVLNVVEDFRQTKACNLSLVNSEEAVDGVEDLIDIDMLLDDENFLPIAFN 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi294g00015 1005 SMART ANK_2a 687 716 IPR002110 GO:0005515
Sebi294g00015 1005 SMART ANK_2a 726 755 IPR002110 GO:0005515
Sebi294g00015 1005 MobiDBLite consensus disorder prediction 245 268 - -
Sebi294g00015 1005 Pfam IPT/TIG domain 454 539 IPR002909 -
Sebi294g00015 1005 ProSiteProfiles Ankyrin repeat region circular profile. 687 712 - -
Sebi294g00015 1005 ProSiteProfiles CG-1 DNA-binding domain profile. 1 101 IPR005559 GO:0003677
Sebi294g00015 1005 MobiDBLite consensus disorder prediction 351 377 - -
Sebi294g00015 1005 Pfam CG-1 domain 2 94 IPR005559 GO:0003677
Sebi294g00015 1005 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 2 967 - -
Sebi294g00015 1005 MobiDBLite consensus disorder prediction 106 147 - -
Sebi294g00015 1005 ProSiteProfiles IQ motif profile. 863 892 IPR000048 GO:0005515
Sebi294g00015 1005 SUPERFAMILY E set domains 454 539 IPR014756 -
Sebi294g00015 1005 Gene3D - 863 907 - -
Sebi294g00015 1005 Gene3D - 623 757 IPR036770 -
Sebi294g00015 1005 ProSiteProfiles Ankyrin repeat profile. 687 719 IPR002110 GO:0005515
Sebi294g00015 1005 SUPERFAMILY Ankyrin repeat 643 748 IPR036770 -
Sebi294g00015 1005 Pfam Ankyrin repeats (3 copies) 659 748 IPR002110 GO:0005515
Sebi294g00015 1005 Gene3D Immunoglobulins 447 542 IPR013783 -
Sebi294g00015 1005 FunFam Calmodulin-binding transcription activator 2 447 543 - -
Sebi294g00015 1005 SMART CG_1_2 1 96 IPR005559 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi294g00015 Sebi-Chr294 239803 247257 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi294g00015 2 986 CAMTA Transcription Factor Family AT5G64220 49.712 0.0 917
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Sebi294g00015 Ank_2 4.2e-07 CL0465