Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi293g00095 ATGGGAGAGGTTGTGTTGCTCGTTGATGATTTGAAATCACTTTCTGGGATTTCTCGATGTAGAATATGTCATGAAGAAGAATTCGAAAGCTCCAAAACCTTGGAAGCTCCTTGTGCTTGTTCTGGGACCGTTAAGTTTGCTCATAGAGATTGCATTCAGACATGGTGCAATGAGAAAGGAAATACAACTTGTGAAATATGTTTACAGCAATATGAACCTGGATATACAGCACCTCCAAAAAAATCTCAAATATCTGATGCCGCAATGACCATTAGAGAAAGCCTGCAAATTTCAATGCTGGAGCAAGAACCATTAAACACAAGAATAGTGGGTATAGTTGAAGGAGTAACAATAGAAAACAATTACTCTGAATGCACCTATGCTGCAGATAGAAGCGCGTCTCTCTGTCGATCACTGGCTTTAGCTTTTACTCTCATTTTGCTTGTAAGACATCTTTTCGCTCTGCTTACAAGTGGAATGGAAGATTATCCATTTACAATTCTTACA 507 0.3886 MGEVVLLVDDLKSLSGISRCRICHEEEFESSKTLEAPCACSGTVKFAHRDCIQTWCNEKGNTTCEICLQQYEPGYTAPPKKSQISDAAMTIRESLQISMLEQEPLNTRIVGIVEGVTIENNYSECTYAADRSASLCRSLALAFTLILLVRHLFALLTSGMEDYPFTILT 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi293g00095 169 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 77 IPR013083 -
Sebi293g00095 169 ProSiteProfiles Zinc finger RING-type profile. 20 67 IPR001841 -
Sebi293g00095 169 SUPERFAMILY RING/U-box 19 72 - -
Sebi293g00095 169 CDD RING_CH-C4HC3_MARCH 20 67 - -
Sebi293g00095 169 FunFam E3 ubiquitin-protein ligase MARCH4 9 77 - -
Sebi293g00095 169 Pfam RING-variant domain 20 67 IPR011016 GO:0008270
Sebi293g00095 169 ProSiteProfiles Zinc finger RING-CH-type profile. 12 74 IPR011016 GO:0008270
Sebi293g00095 169 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 17 167 IPR033275 -
Sebi293g00095 169 SMART ringv_2 19 68 IPR011016 GO:0008270
Sebi293g00095 169 Pfam Protein of unknown function (DUF3675) 73 169 IPR022143 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi293g00095 Sebi-Chr293 1200485 1202568 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi293g00095 20 67 C3H Transcription Factor Family AT2G37950 44.898 1.19e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi293g00095 - - gmx:100797029 304.679