Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi293g00087 ATGTTGCAGACGAGTCATCCATCGCGAGTGTTTCGCGGTGTTCATTTCGTTCTCTTTGGATTCGATCCCGTCAATGAAAGCAAGATTCGATTCAAGCTTGTAAATGGCGGTGGAGTTGATTTGGGGCACTACAGTGCGAGTTGCACGCATGTTATTGTTGATAAGATTACATATGACGATGCTGTGTGTGTTGCTGCCAGAAAAGATCGGAAGACGCTCGTCACTGCATTGTGGGTTGAACACAGTGCTGATATTGGAATGCCCGTTGATGCTACCTCGGTTATGTATAGACCACTTAAGAATTTAAATGGAATACCGGGTGCGAAGAATTTGATTGTGTGCTTGACTGGTTATCTACGCCAGGATCGGGATGACATTATGACAATGGTTAGCCTGATGGGTGCACAGTTTTCTAAACCATTGGTGGCAAACAAGGTTACTCATCTTATATGCTACAAATTTGAAGGGGAGAAGTACGAACTTGCCAAGAGATTGGGCACAATAAAGCTAGTTAATCATCGTTGGTTGGAAGATTGCTTGAAGGATTGGGTGCTTCTTCCTGAAGACAAATATAACAAGAGTGGTTTTGAACTAGAGATGATAACAGAAGAGGCTAAGGATTCTGAGGAAGAGGCTGAAGATTCCAAGGTGGGGCAATCAGGAGGAAGAAATATAAGCAGAAGTCCCCTTAGTTCAAAATTTGGTATAGCTGCAACTCATGGATTGTCAAATTCAGTAAGTGAAGCATCAAGCATCAAACACGCTTCACCTATACCAGGAAATAAGAACAGATCTGATCAAGACTTACGTTTGCATAGTGTTGATGATATGAAGATGAGCTGTCAAACTCCTGATGTTTCACGGCGTTCTACATCATGTCAGCTACCTGATGCATGTGTTAAGACCAGTGAGTCCAAGAATGCTGGTTTTCCAAGCTGTCAGGATCTTGGCCTTACTGGAAATGCAAACTCATCTGGTCAGCAACATGATCTGCATGATCACACTTCTGAGTCTAAGAAGTTGGTAAGTGACAAGAGATCAACTTCTGCAAGTGCTGAGGGACTTGCACATTCAGATGAAAAACTTAGTGCTATGAGTTATTCTAGGAAGAACCAAAAGGGATTTACTCTTCCAAGGGTCTTGGATGACTGCTCAGGTATAGAAAGCAACAACCGTGAAACTTCTTCCACTAAGTTAAAGGCAAGTGAGGGAATCAAATCTACCTGTATTGAAGGTTCTAGGAAAGGAAATGATTTTATTGAAGGGGATGAGCCAATTAGTTTATTGCCTCAAAAGAGAGTAAATGAAGCTGCTTCTACTAAATTAAAAAAATCAAAGAAGATGTCTGCTGATGCAAAGTTGTCTATTGAAAGAACTCCAGCAGCAAAAGGTAAATCTCAAGGATTAAAAGTGACATCTGTGGTTGATGAGCCACCTGAGTCTGACGGCTATTTTTCTGTTGGCAAAGATGGTTTAAATAAGTCAAACCCTTGCTTAATTTCTAAATCTGCAGCTTCTACCTCCAACTTACTGGCTTTTGACGAGCCTATCTCAAAAAATGCAAGCTCAGAGTCTGCTCAATGTGATAACACCTATCAGAATTCGGCACATGTGGCTATTCAAGGCTTAAATGAGTCTAAAGTTAATGGTGGGCCTGATATTACAGGTTTTGGACTGGGACAAGATGATAATGAAGCAGGGCAGCTTAATGTCACTAAAAATCTCGAGTGTAGATCATCACCAGAAAACAAGAAGCCACTGAATGAGGAATCCGCTGGTCGTTTGGATTTAAGCAATGAAGACAGTAATAAGCTGATTAGGAAATCACCTCGCAAGAAGTCATTTGCCAAGAGAAGTTTGGGTTCTAGACCCAAAACAGGTGTCACTGCTAAACTGAAAAGTTCAGTTTCCTTGAATAAAACTACCCCTCAAAGTGAAGGTGTAAGTTCTTCCAGTGGAAGCAAAGAGATAGCAACTTGTGATGCCAAGAAGCATCAGGCGTCCCCTCAAAACCTTGGTGTTAATAAATTAATGGAGCAAGAAACAGTTAGTAAATATGAAGAAGTTGCTGGTGGGAGAACTGAATTTTTGGATGACGAAACAGAGGCTCCTGATGAAAAATGTGAATATGAGTTGGGAATGGCTGTTGATGAAGAATTGGTTCATCTATCAAAAAAAGCAGACCCAGCAACAGAAATGAAGTCAGAAGCAATTCACCAAGTACAAAAAAGTGAAGAAGCAATGCCTCCTAAAAGAGGCACTGATGAAGCTGAAAAACAGAAGCCACCTTCACGGGAAGACTCAACCTCAAAGTTTAGAGTAAAGCATCCAGCGAAGAAGCGTCCTGCAACTACAGCCAAGAAGACCACAATTTCAAAGAAGAAATCTGAAGAGGCAGTGTCTAGGGACAAGATTCCTAATGAGACGAGATATGAGGCAGAAATAGAAATCCAGGAAGAAATGTCTGTACCTGCTGATATAAGTGACAACTCAACTATACCAAGAAATAAGGCAGAGACATTTATTGAAGAGGAGAAGGAGAATATACCAATTGATGGAGAGCAGGATATAGTGGAAGACAGAAATGTTGGAAATCCAACTAATAAATCTAGTGTAAGGCCAGGAAAAATCAACTCCAAGAAAACGGGGCTCCATCCTTCTACATCAGAATCTAACGCAAGAGTAAAAACTGAAGCCACATGTTTTATATTAAGTGGGCATCGCCTACAGAGAAAGGAGTTTCAACAAGTAATCAAGCGTTTGAAAGGAAGGGTTTGCCGGGACTCTCATCAGTGGTCATATCAGGCGACACACTACATAGCTCCAGACCCTATACGCAGGACAGAGAAATTTTTTGCAGCTACTGCATCAGGAAGGTGGATTCTTAAAACTGATTTCTTAACTGCCAGTAGCCAGGCAGGAAAATTCATGCCAGAGGAGCCTTATGAGTGGCACAAGAATGGTCTCAGTGAGGATGGTGCAATCAATATGGAGGCTCCGAGAAAGTGGCGGCTGTTGAAAGAAAGAACAGGTCATGGTGCCTTATATGGGATGCGCATTGTTGTATATGGCGATTGTATTGCCCCGCCTTTGGATACTTTGAAGCGTGTAGTCAAAGCTGGAGATGGAACAATATTAGCAACATCTCCTCCTTATACCCGCTTCCTTGGTACTGGGATCGATTATGCCATAGTTAGCCCTGGAATGCCACGTGTTGATTTGTGGGTCCAAGAGTTCTTAAAACATGAGATACCTTGTGTTGTAGCGGACTATTTGGTCGAGTATGTCTGCAAGCCCGGCTTCTCCCTTGAGAGACATGTTTTATATGGCACTCATACTTGGGCAGAGAGGTCATTTGCAAAACTTCAAAGTAGAGCAGAAGAGATTATTGAGGAGCTCATTGCTCCTGAGGATGGCAATGATAATGATATAACTTGCCAAGTATGTGGATCCCGGGATAGAGGAGATGTAATGCTGATTTGTGGTGATGAAAGTGGTTCTGTGGGCTGTGGAATCGGTACCCATATCGATTGCTGTGATCCTCCACTCACAGATGTTCCTGAGGAGGATTGGTTTTGCCCAAAATGCTCTAGCACCAAAAACTGCTCGAACAATCCCAGGAAAAAGAAAAAGGGTGCATTGTCTTTATCTAAGGGTAAGTGA 3663 0.4215 MLQTSHPSRVFRGVHFVLFGFDPVNESKIRFKLVNGGGVDLGHYSASCTHVIVDKITYDDAVCVAARKDRKTLVTALWVEHSADIGMPVDATSVMYRPLKNLNGIPGAKNLIVCLTGYLRQDRDDIMTMVSLMGAQFSKPLVANKVTHLICYKFEGEKYELAKRLGTIKLVNHRWLEDCLKDWVLLPEDKYNKSGFELEMITEEAKDSEEEAEDSKVGQSGGRNISRSPLSSKFGIAATHGLSNSVSEASSIKHASPIPGNKNRSDQDLRLHSVDDMKMSCQTPDVSRRSTSCQLPDACVKTSESKNAGFPSCQDLGLTGNANSSGQQHDLHDHTSESKKLVSDKRSTSASAEGLAHSDEKLSAMSYSRKNQKGFTLPRVLDDCSGIESNNRETSSTKLKASEGIKSTCIEGSRKGNDFIEGDEPISLLPQKRVNEAASTKLKKSKKMSADAKLSIERTPAAKGKSQGLKVTSVVDEPPESDGYFSVGKDGLNKSNPCLISKSAASTSNLLAFDEPISKNASSESAQCDNTYQNSAHVAIQGLNESKVNGGPDITGFGLGQDDNEAGQLNVTKNLECRSSPENKKPLNEESAGRLDLSNEDSNKLIRKSPRKKSFAKRSLGSRPKTGVTAKLKSSVSLNKTTPQSEGVSSSSGSKEIATCDAKKHQASPQNLGVNKLMEQETVSKYEEVAGGRTEFLDDETEAPDEKCEYELGMAVDEELVHLSKKADPATEMKSEAIHQVQKSEEAMPPKRGTDEAEKQKPPSREDSTSKFRVKHPAKKRPATTAKKTTISKKKSEEAVSRDKIPNETRYEAEIEIQEEMSVPADISDNSTIPRNKAETFIEEEKENIPIDGEQDIVEDRNVGNPTNKSSVRPGKINSKKTGLHPSTSESNARVKTEATCFILSGHRLQRKEFQQVIKRLKGRVCRDSHQWSYQATHYIAPDPIRRTEKFFAATASGRWILKTDFLTASSQAGKFMPEEPYEWHKNGLSEDGAINMEAPRKWRLLKERTGHGALYGMRIVVYGDCIAPPLDTLKRVVKAGDGTILATSPPYTRFLGTGIDYAIVSPGMPRVDLWVQEFLKHEIPCVVADYLVEYVCKPGFSLERHVLYGTHTWAERSFAKLQSRAEEIIEELIAPEDGNDNDITCQVCGSRDRGDVMLICGDESGSVGCGIGTHIDCCDPPLTDVPEEDWFCPKCSSTKNCSNNPRKKKKGALSLSKGK 1220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi293g00087 1220 MobiDBLite consensus disorder prediction 573 676 - -
Sebi293g00087 1220 ProSiteProfiles Zinc finger PHD-type profile. 1143 1199 IPR019787 -
Sebi293g00087 1220 ProSiteProfiles BRCT domain profile. 6 96 IPR001357 -
Sebi293g00087 1220 MobiDBLite consensus disorder prediction 248 263 - -
Sebi293g00087 1220 SMART PHD_3 1145 1197 IPR001965 -
Sebi293g00087 1220 MobiDBLite consensus disorder prediction 578 608 - -
Sebi293g00087 1220 MobiDBLite consensus disorder prediction 725 773 - -
Sebi293g00087 1220 CDD BRCT_TopBP1_rpt7 901 974 - -
Sebi293g00087 1220 SUPERFAMILY BRCT domain 7 92 IPR036420 -
Sebi293g00087 1220 Gene3D BRCT domain 99 221 IPR036420 -
Sebi293g00087 1220 Pfam twin BRCT domain 111 175 IPR001357 -
Sebi293g00087 1220 SMART BRCT_7 1012 1099 IPR001357 -
Sebi293g00087 1220 SMART BRCT_7 106 183 IPR001357 -
Sebi293g00087 1220 SMART BRCT_7 8 86 IPR001357 -
Sebi293g00087 1220 SMART BRCT_7 893 974 IPR001357 -
Sebi293g00087 1220 MobiDBLite consensus disorder prediction 248 267 - -
Sebi293g00087 1220 MobiDBLite consensus disorder prediction 204 230 - -
Sebi293g00087 1220 Gene3D BRCT domain 1012 1109 IPR036420 -
Sebi293g00087 1220 ProSiteProfiles BRCT domain profile. 109 193 IPR001357 -
Sebi293g00087 1220 ProSiteProfiles BRCT domain profile. 902 984 IPR001357 -
Sebi293g00087 1220 Gene3D BRCT domain 1 95 IPR036420 -
Sebi293g00087 1220 MobiDBLite consensus disorder prediction 330 346 - -
Sebi293g00087 1220 MobiDBLite consensus disorder prediction 790 810 - -
Sebi293g00087 1220 MobiDBLite consensus disorder prediction 725 810 - -
Sebi293g00087 1220 MobiDBLite consensus disorder prediction 1204 1220 - -
Sebi293g00087 1220 MobiDBLite consensus disorder prediction 628 657 - -
Sebi293g00087 1220 Pfam PHD-finger 1146 1198 IPR019787 -
Sebi293g00087 1220 Gene3D BRCT domain 894 1010 IPR036420 -
Sebi293g00087 1220 MobiDBLite consensus disorder prediction 861 892 - -
Sebi293g00087 1220 SUPERFAMILY BRCT domain 109 192 IPR036420 -
Sebi293g00087 1220 MobiDBLite consensus disorder prediction 774 788 - -
Sebi293g00087 1220 MobiDBLite consensus disorder prediction 859 892 - -
Sebi293g00087 1220 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1110 1212 IPR013083 -
Sebi293g00087 1220 Pfam BRCA1 C Terminus (BRCT) domain 905 969 IPR001357 -
Sebi293g00087 1220 MobiDBLite consensus disorder prediction 1201 1220 - -
Sebi293g00087 1220 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 778 1211 IPR044254 -
Sebi293g00087 1220 SUPERFAMILY BRCT domain 901 988 IPR036420 -
Sebi293g00087 1220 MobiDBLite consensus disorder prediction 319 358 - -
Sebi293g00087 1220 SUPERFAMILY FYVE/PHD zinc finger 1136 1203 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi293g00087 Sebi-Chr293 1100650 1106455 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi293g00087 129 235 Core DNA Replication Machinery Family AT4G02110 65.421 7.19e-37 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Sebi293g00087 BRCT 2.1e-06 CL0459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi293g00087 K10728 - qsa:O6P43_007236 1152.89