Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi293g00057 ATGTGTGGCGGTGCTATCATCGCTGATTTCATTCCTCATCGTGGAGGTCGCCGTCTCACGGCCTCTGAGCTTTGGCCCAATTCATTCGGTAAGAAGAATGATTCAGACTTCGATTATTCTCATGTGCCTCATCAACAACCATCCACTCTCAAAAGATCTCAACCTTGCACAGTTGAGAAGCCGGTGAAAAGGCAGAGGAAAAACCTCTACAGAGGGATTCGCCAGCGTCCTTGGGGTAAATGGGCTGCAGAGATTCGCGATCCTAGAAAAGGGGTTCGTGTTTGGCTTGGTACCTTCAACACTGCTGAAGAAGCTGCTAGGGCCTATGATCAAGAGGCTCGAAAAATCCGTGGTGAGAAAGCCAAGCATGTAAACGGTTATTTTGGTGGTATGATGAAAACGAATGAGAAAGAAGCAGAGCAAGAGCAAAAAACAGAGGTGATTGAAGCTGAAGCTGCTAAGAGCGAAGTGCAGGAGCTATCAGAAGAGCTGATGGCATATGAGAATTACATGAAGTTTTATCAGATTCCTTACTATGATGGGCAATCTGTGGCGCAGAATAATGTTCAGGAAAGTGTGGTTGGGGATCTATGGAGCTTCGATTGA 606 0.4637 MCGGAIIADFIPHRGGRRLTASELWPNSFGKKNDSDFDYSHVPHQQPSTLKRSQPCTVEKPVKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDQEARKIRGEKAKHVNGYFGGMMKTNEKEAEQEQKTEVIEAEAAKSEVQELSEELMAYENYMKFYQIPYYDGQSVAQNNVQESVVGDLWSFD 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi293g00057 201 SMART rav1_2 69 129 IPR001471 GO:0003700|GO:0006355
Sebi293g00057 201 PANTHER DNA-BINDING DOMAIN 52 137 IPR044808 GO:0003700|GO:0009873
Sebi293g00057 201 Gene3D AP2/ERF domain 69 125 IPR036955 GO:0003700|GO:0006355
Sebi293g00057 201 ProSiteProfiles AP2/ERF domain profile. 69 127 IPR001471 GO:0003700|GO:0006355
Sebi293g00057 201 FunFam Ethylene-responsive transcription factor 2 68 125 - -
Sebi293g00057 201 CDD AP2 70 121 IPR001471 GO:0003700|GO:0006355
Sebi293g00057 201 Pfam AP2 domain 70 118 IPR001471 GO:0003700|GO:0006355
Sebi293g00057 201 PRINTS Ethylene responsive element binding protein signature 70 81 IPR001471 GO:0003700|GO:0006355
Sebi293g00057 201 PRINTS Ethylene responsive element binding protein signature 92 108 IPR001471 GO:0003700|GO:0006355
Sebi293g00057 201 Coils Coil 143 170 - -
Sebi293g00057 201 SUPERFAMILY DNA-binding domain 69 122 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi293g00057 Sebi-Chr293 698277 699309 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi293g00057 1 200 AP2-EREBP Transcription Factor Family AT2G47520 47.805 1.35e-50 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Sebi293g00057 AP2 8.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi293g00057 K09286 - mnt:21384619 224.557