Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi293g00050 ATGAATAACCTCAGAAGAACAGCACCCTTTCTGATTCTTGTATTCATTCTGACCATAGTAGTTCTTCCTCTACTCTTTTTGGGAACCAATTTCACTCACACCATAGCATCATCAACACATTCCCAAGAAAAACACCTCCATTATTTCCAAAAGCACATACAAGTAGCTCATTCTACATGCCAAGGAACACTCTACCCAGAGCTATGTGTCTCAACCCTGTCCACCTTCCCAGATCTTGCTTCAAAATCTGTTCCACAAATAATCTCCACCATGGTCAATCACACTGTATCAGAGGTGAGATCATCATCCTACAACTGCAGTGGCCTTAAGAAAAAGCTCAAAAATCTCAACCCACTTGAACAGAGAGCTCTGGATGACTGTCTCAAACTGTTTGATGACACCACTGCAGAGCTCAAAACCACCATTGCTGACCTTTCAAAAACCACAATAGGCTCCAAGAAGCACCATGACTTGCAGACTCTGCTAAGTGGCGCAATGACCAACTTGTACACGTGCCTAGATGGATTTGCTTACAGCAAAGGAAACGTGAGAGACAGATTCCAAGAGAAGCTGCTTGAGATATCACATCACGTTAGTAACTCCTTGGCCATGTTGAAGAAAGTGCCTGGAGGAAAGAAAACGTCCAATTCTGAAGTTTTCCCTGAATATGGAAAAATGAAAAAAGGGTTCCCCTCTTGGGTTTCCCCTAAAGACAGAAAACTCCTCCAAGCTTCTGTGAATGAGACCAAGTTTGATCTTGTCGTTGCCAAAGATGGCACTGGCAATTTCACCACTATTGGGGAAGCTGTGGCTGCAGCTCCCAACTCCAGCGAAACCAGGTTTGTGATACACATAAAGGCTGGGGGATACTTTGAGAATGTGGAAGTGATCAGGAAGAAGAGCAATCTGATGTTTGTTGGAGATGGAATTGGAAAGACGGTAGTGAAAGCCAGTAGGAATGTTGTGGATGGGTGGACCACTTTCCAATCAGCTACTGTTGCTGTGGTAGGAGACAAATTCATAGCGAAGGGTATAACTTTTGAGAACTCAGCAGGGCCTGACAAACACCAAGCAGTTGCCCTGAGGAGTGGTGCAGACTTCTCAGCGTTCTACCAATGCAGCTTTGTTGGCTACCAAGACACTCTCTACGTCCATTCCCTACGCCAATTCTATCGCGAATGCGACATTTATGGCACTGTTGACTTCATTTTTGGCAACGCAGCCGTTGTCTTCCAAAACTGCAACATATACGCACGCAAGCCAAATGAAAATCAGAAGAATTTGTTCACTGCACAAGGCAGAGAGGACCCTAACCAAAACACTGGCATATCAATCTTGAACTGCAAGATAGCAGCAGCTGCGGATTTAATCCCAGTGAAATCATCGTTCAAGAGCTACTTAGGTCGTCCTTGGAAATTATATTCAAGGACGGTTTATCTCAAATCTTACATGGAGGATCTGATAGATCCAGCAGGGTGGTTGGAATGGAATGATACATTTGCATTGGATACATTGTATTATGGAGAGTACATGAACAGGGGTCCAGGTTCAAACACAAGTGCTAGAGTTAAGTGGCCAGGTTATAGGGTCATTAATAGCTCCACTGAGGCAAGCCAATTCACAGTTGGACAGTTTATACAGGGGAATGAATGGTTGAACTCCACTGGCATTCCATTCTTCTCTGAGTTGAGTTGA 1695 0.4419 MNNLRRTAPFLILVFILTIVVLPLLFLGTNFTHTIASSTHSQEKHLHYFQKHIQVAHSTCQGTLYPELCVSTLSTFPDLASKSVPQIISTMVNHTVSEVRSSSYNCSGLKKKLKNLNPLEQRALDDCLKLFDDTTAELKTTIADLSKTTIGSKKHHDLQTLLSGAMTNLYTCLDGFAYSKGNVRDRFQEKLLEISHHVSNSLAMLKKVPGGKKTSNSEVFPEYGKMKKGFPSWVSPKDRKLLQASVNETKFDLVVAKDGTGNFTTIGEAVAAAPNSSETRFVIHIKAGGYFENVEVIRKKSNLMFVGDGIGKTVVKASRNVVDGWTTFQSATVAVVGDKFIAKGITFENSAGPDKHQAVALRSGADFSAFYQCSFVGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAVVFQNCNIYARKPNENQKNLFTAQGREDPNQNTGISILNCKIAAAADLIPVKSSFKSYLGRPWKLYSRTVYLKSYMEDLIDPAGWLEWNDTFALDTLYYGEYMNRGPGSNTSARVKWPGYRVINSSTEASQFTVGQFIQGNEWLNSTGIPFFSELS 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi293g00050 564 FunFam Pectinesterase 53 210 - -
Sebi293g00050 564 Pfam Plant invertase/pectin methylesterase inhibitor 57 204 IPR006501 GO:0004857
Sebi293g00050 564 ProSitePatterns Pectinesterase signature 2. 396 405 IPR033131 -
Sebi293g00050 564 CDD PMEI-like_3 58 210 - -
Sebi293g00050 564 PANTHER PECTINESTERASE 21 553 - -
Sebi293g00050 564 Gene3D - 246 563 IPR012334 -
Sebi293g00050 564 Pfam Pectinesterase 252 549 IPR000070 GO:0030599|GO:0042545
Sebi293g00050 564 NCBIfam pectinesterase inhibitor domain 37 207 IPR006501 GO:0004857
Sebi293g00050 564 SUPERFAMILY Pectin lyase-like 250 560 IPR011050 -
Sebi293g00050 564 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 57 208 IPR035513 -
Sebi293g00050 564 Gene3D Invertase/pectin methylesterase inhibitor family protein 54 210 IPR035513 -
Sebi293g00050 564 FunFam Pectinesterase 246 563 - -
Sebi293g00050 564 SMART PMEI_2 51 204 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi293g00050 Sebi-Chr293 611170 619256 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi293g00050 80 563 Carbohydrate Esterase AT4G02320 58.149 0.0 592
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi293g00050 K01051 - gmx:100802881 944.88