Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi293g00049 ATGGCTTTTAAGCACTTCTCCTTTTCCATTCTTACTTCCTATCTGCTTTCCTTCTTGGTCTTCTCATCACTGTCCATAGCAAACGGTGCTTCATCCGCCATAGTTCCACCTGAAGCCATTTGTGGGTCCACTGTTGACCCTACTTATTGCAAAACCGTTCTTGCTAATCAAAATGGCAATATCTATGACTATGGCCGCATTTCTATGCGAAAGTCCCTATCCCAATCCCGTAAGTTCATGAACTTAGTAGACTCTTACATTCAAGGTAGCTCCTCTTTGTCTCAATCCACAGTTCGCGCTCTTCAAGACTGCAAATTCCTTGCTGAACTGAGTTTTGAGTACTTATCAAACACTTATGCCACAACCAATCAAGCTAGTGATGTTCTTCCCACTTCTCAAGCTGATGATTTTGAAACCATTCTCAGTGCCGTTTTAACTAACCAACAGACATGTTTAGATGGTTTACAGACCACAGCTTCTGATGCAAGATTGAAGAACGACCTCTCCTCATCGCTCTCTGATGACACAAAACTTCACAGTGTCACCCTGGCCCTGTTCCTAAAGGGTTGGGTGCCTCAGAAGAAAATCAAAACCTCATGGCAACAAAACGGCAGGCATTTGAATTTCAAAAATGGTCGTTTACCATTGAAGATGTCAGATCGTGCACGTTCTATCTATGACTCCGCTAGACGCCATGGGAGGAAACTGCTTCAAACAGCCACTGACGGTGAAAGCGTTGTGGTAAGTGACATTGTGGTTGTTAGTAAAGATGGAAGCGGAAACTTCACCACTATCAATGATGCAATAGCTGCTGCACCAAACAATAGCGTTGCTAGTAATGGCTACTTCATGATAATTATCACTGAAGGTGTGTGTCAAGAGTATGTTTCCATAGACAAAAGCAAGAAGTACTTGATGCTTGTTGGAGAAGGAATCAATCGGACAATTATCACTGGCAATCACAATGTGGTTGATGGTTTCACAACATTCAACTCAGCAACATTTGCTGTGGTCGGTCAAGGGTTTGTAGCAGTGAACATAACATTCCGCAACACTGCTGGACCAAGCAAGCACCAAGCAGTTGCACTCAGAAGTGGAGCAGATATGTCCACCTTCTACAGCTGCAGCTTTGAAGGATATCAAGACACATTGTATACACATTCCATGAGGCAGCTATATAGAGAATGTGATATCTATGGCACTGTGGACTTCATATTTGGAAATGCTGCTGTTGTTTTGCAAAACTGCAACATCTATCCCCGCCTTCCCCTCAGTGGACAATTCAATACCATCACAGCTCAAGGTCGAACGGATCCAAGTCAAAACACAGGCACTTCCATACAGAATGCTACTATTAAAGCAGCTGATGATTTGGCTCCAAAAGTTGGTACAGTGCAAACGTACCTTGGGAGACCATGGAAACAATATTCAAGGACAGTTGTGATGCAATCCTTCATGGATAGTTTTATAAATCCAGCTGGTTGGCATGAATGGAGTGGTGATTTTGCACTGAGCACATTATACTATGCAGAATACGCTAACACTGGACCTGGTTCAGATACTACGAATCGAGTGACGTGGCCCGGTTATCATGTTATCAATGCTACTGATGCAGCCAATTTTACGGTGTCTAACTTCTTGAGCGGGGATGAGTGGCTTCCCCAAACTGGTGTTCCATTTTTGAGTGGATTGATATAG 1698 0.4335 MAFKHFSFSILTSYLLSFLVFSSLSIANGASSAIVPPEAICGSTVDPTYCKTVLANQNGNIYDYGRISMRKSLSQSRKFMNLVDSYIQGSSSLSQSTVRALQDCKFLAELSFEYLSNTYATTNQASDVLPTSQADDFETILSAVLTNQQTCLDGLQTTASDARLKNDLSSSLSDDTKLHSVTLALFLKGWVPQKKIKTSWQQNGRHLNFKNGRLPLKMSDRARSIYDSARRHGRKLLQTATDGESVVVSDIVVVSKDGSGNFTTINDAIAAAPNNSVASNGYFMIIITEGVCQEYVSIDKSKKYLMLVGEGINRTIITGNHNVVDGFTTFNSATFAVVGQGFVAVNITFRNTAGPSKHQAVALRSGADMSTFYSCSFEGYQDTLYTHSMRQLYRECDIYGTVDFIFGNAAVVLQNCNIYPRLPLSGQFNTITAQGRTDPSQNTGTSIQNATIKAADDLAPKVGTVQTYLGRPWKQYSRTVVMQSFMDSFINPAGWHEWSGDFALSTLYYAEYANTGPGSDTTNRVTWPGYHVINATDAANFTVSNFLSGDEWLPQTGVPFLSGLI 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi293g00049 565 CDD PMEI-like_3 39 190 - -
Sebi293g00049 565 SMART PMEI_2 32 185 IPR006501 GO:0004857
Sebi293g00049 565 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 39 186 IPR035513 -
Sebi293g00049 565 PANTHER PECTINESTERASE 26 554 - -
Sebi293g00049 565 Pfam Pectinesterase 252 550 IPR000070 GO:0030599|GO:0042545
Sebi293g00049 565 ProSitePatterns Pectinesterase signature 2. 398 407 IPR033131 -
Sebi293g00049 565 Gene3D - 249 565 IPR012334 -
Sebi293g00049 565 SUPERFAMILY Pectin lyase-like 247 563 IPR011050 -
Sebi293g00049 565 Gene3D Invertase/pectin methylesterase inhibitor family protein 38 188 IPR035513 -
Sebi293g00049 565 FunFam Pectinesterase 245 564 - -
Sebi293g00049 565 Pfam Plant invertase/pectin methylesterase inhibitor 38 185 IPR006501 GO:0004857
Sebi293g00049 565 FunFam Pectinesterase 38 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi293g00049 Sebi-Chr293 604481 606302 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi293g00049 10 565 Carbohydrate Esterase AT1G02810 58.276 0.0 680
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi293g00049 K01051 - gmx:100786124 860.907