Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi293g00047 ATGGCTCCCAAGATTTTTTCCATTTCCTATCTGCTTGCCATCATCTTGGTCTTGGCACCATTATCCATAGCAAATGCTGCTTCATCCTCCGTGGTTCCACCAGAAACCATTTGTGGATCCACTGTTGACCCTGCTTACTGCAAAACTGTTCTTGCAAATCAAAATGGCAATATCTATGACTATGGTCGCATCTCTATTCGAAAGTCCATGTCCCAGTCGCGTAAGTTCATGAACTTAGTGGACTCATATCTTCAAGGTAGCTCCTCTTTGTCTCAATCCACAGTTCGCGCTCTTCAAGACTGCAAATTCCTTGCTGAATTGAGTTTTGAATACTTATCAAACACTTATGCCACAACAAATCAAGCTAGTGATGTTCTTCCCACTTCTCAAGCTGACGATTTTGAAACCATTCTCAGTGCTGTTTTGACTAACCAACAGACTTGTTTAGATGGCTTACAAACCACAGCTTCTGATGTAAGAGTGAAGAACGACCTCTCCTCATCGCTCTCCGATGACACGAAACTTCACAGTGTCTCCTTGGCCTTGTTCCTAAAAGGTTGGGTACCTGAGAAGAAAATCATAACATCATGGCAACAAAACGGCAGGCATTTGAATTTCAAAAATGGCCGTTTACCACTGAAGATGTCTAATCATGCACGTTCTATTTATGACTCCGCTAGACGCCATGGTAGAAAACTACTTCAAACTGTCACCGACAATGAAAGCGTTGTTGTAAGTGACATTGTGGTTGTTAGTCAAGATGGAAGCGGAAATTTCACCACTATCAATGATGCAATAGCTGCTGCACCAAACAATAGCGTTGCTAGTAATGGCTACTTCATGATATTTATCACCCAAGCTGTGGTCGGTCAAGGGTTTGTAGCAACTAACATAACATTCCGCAACACTGCTGGACCAAGCAAGATGCAAGCGGTTGCACTAAGAAGTGGAGCCGATATGTCTACCTTTTACAGCTGCAGCTTTGAAGGATATCAAGACACATTGTATACACATTCCATGAGGCAGTTTTATAGAGAATGTGATATTTATGGCACGGTGGACTTCATATTTGGAAATGCTGCTGTTGTTTTGCAAAACTGCAACATCTATCCCCGCCTTCCCCTCAGTGGACAATTCAATACCATCACAGCTCAAGGTCGAACGGATCCAAGTCAAAACACAGGCACTTCCATACAGAATGCTACTATTAAAGCAGCTGATGATTTGGCTCCAAATGTTGGTACCGTGCAAACGTATCTTGGGAGACCATGGAAACAATATTCAAGGACAGTTGTGATGCAATCCTTCATGGATAGTTTTATAAACCCTGCTGGTTGGCATGAATGGAGTGGTGATTTTGCATTGAGCACATTATACTATGCAGAATACGCTAACACGGGACCTGGTTCAGACACTACGAATCGAGTGACGTGGCCTGGTTATCATGTTATCAATGCTACGGATGCAGCCAATTTTACGGTGTCTAACTTGTTGAGCGGAGATAATTGGCTTCCTCAAACTGGTGTCCCATACTTAAGTGGTTTGATATAG 1551 0.4281 MAPKIFSISYLLAIILVLAPLSIANAASSSVVPPETICGSTVDPAYCKTVLANQNGNIYDYGRISIRKSMSQSRKFMNLVDSYLQGSSSLSQSTVRALQDCKFLAELSFEYLSNTYATTNQASDVLPTSQADDFETILSAVLTNQQTCLDGLQTTASDVRVKNDLSSSLSDDTKLHSVSLALFLKGWVPEKKIITSWQQNGRHLNFKNGRLPLKMSNHARSIYDSARRHGRKLLQTVTDNESVVVSDIVVVSQDGSGNFTTINDAIAAAPNNSVASNGYFMIFITQAVVGQGFVATNITFRNTAGPSKMQAVALRSGADMSTFYSCSFEGYQDTLYTHSMRQFYRECDIYGTVDFIFGNAAVVLQNCNIYPRLPLSGQFNTITAQGRTDPSQNTGTSIQNATIKAADDLAPNVGTVQTYLGRPWKQYSRTVVMQSFMDSFINPAGWHEWSGDFALSTLYYAEYANTGPGSDTTNRVTWPGYHVINATDAANFTVSNLLSGDNWLPQTGVPYLSGLI 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi293g00047 516 Gene3D Invertase/pectin methylesterase inhibitor family protein 35 185 IPR035513 -
Sebi293g00047 516 SUPERFAMILY Pectin lyase-like 244 514 IPR011050 -
Sebi293g00047 516 Gene3D - 286 516 IPR012334 -
Sebi293g00047 516 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 36 183 IPR035513 -
Sebi293g00047 516 ProSitePatterns Pectinesterase signature 2. 349 358 IPR033131 -
Sebi293g00047 516 FunFam Pectinesterase 35 185 - -
Sebi293g00047 516 CDD PMEI-like_3 36 187 - -
Sebi293g00047 516 PANTHER PECTINESTERASE 17 286 - -
Sebi293g00047 516 Pfam Plant invertase/pectin methylesterase inhibitor 35 182 IPR006501 GO:0004857
Sebi293g00047 516 Gene3D - 212 285 IPR012334 -
Sebi293g00047 516 SMART PMEI_2 29 182 IPR006501 GO:0004857
Sebi293g00047 516 FunFam Pectinesterase 4 273 515 - -
Sebi293g00047 516 Pfam Pectinesterase 285 501 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi293g00047 Sebi-Chr293 585688 587553 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi293g00047 10 516 Carbohydrate Esterase AT4G02330 53.578 0.0 589
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi293g00047 K01051 - gmx:100813051 768.074