Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi293g00044 ATGCATCATGTGGATCTGCAAGCTGTAGTCGCTCAAGGGTTCGTAGCAGTGAACATAACATTCCGCAACACTGCGGGACCAAGCAAAGGCCAAGCAGTTGCACTGAGAAGTGGATCAGATATGTCCACCTTCTATAGCTGCAGCTTTGAAGGGTATCAAGACACATTGTATACACATTCCATGAGGCAGTTTTATAGAGAATGTGATATCTATGGTACTGAGTGGACATTCAATGCCATCACAGCTCAGGTCGAACTGACCCAATCAAAACACAGGCACTTCCATACAAATGCTACAATTAAAGCAGCTGCTGATTTGGCTCCAAATGTTGGTACAGTGCAAACCTATCTTGGGAGACCATGGAAACAATATTCAAGGACAGTTGTGATGCAGTCCTTCATGGATAGTTTTATAAACCCTGCTGGTTGGCATGAATGGAGTGGTGATTTTGCATTGAGTACATTATACTATGCAGAATACGCTAACACTGGACCCGGTTCAGATACTTCTAATCGAGTGACGTGGCCTGTTATCATAAATCATAAGGCCTCATTACTCTATGGTAAGATTGTTATTAAAGAAAGTAATTCATAA 594 0.4209 MHHVDLQAVVAQGFVAVNITFRNTAGPSKGQAVALRSGSDMSTFYSCSFEGYQDTLYTHSMRQFYRECDIYGTEWTFNAITAQVELTQSKHRHFHTNATIKAAADLAPNVGTVQTYLGRPWKQYSRTVVMQSFMDSFINPAGWHEWSGDFALSTLYYAEYANTGPGSDTSNRVTWPVIINHKASLLYGKIVIKESNS 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi293g00044 197 Gene3D - 6 74 IPR012334 -
Sebi293g00044 197 SUPERFAMILY Pectin lyase-like 7 180 IPR011050 -
Sebi293g00044 197 Gene3D - 75 189 IPR012334 -
Sebi293g00044 197 PANTHER PECTINESTERASE 77 179 - -
Sebi293g00044 197 Pfam Pectinesterase 8 73 IPR000070 GO:0030599|GO:0042545
Sebi293g00044 197 Pfam Pectinesterase 77 178 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi293g00044 Sebi-Chr293 573749 574595 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi293g00044 8 176 Carbohydrate Esterase AT1G02810 62.176 3.83e-76 237
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi293g00044 K01051 - gmx:100786124 272.322