Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi293g00014 ATGGTTGAAACCAGACGAGGCTCATCTACTTCCAAGCGCGCTCTCTCTTCGCCTTCTCCTCCCAACACCAAACGATCCAAGGTCTCCGAGGATGCCTCATCCACAAACCTGCCCTCCACGGGAATTATTGCTCCGGTCAACGAATCTGGAACTAGGAATGAATCTGGTGAACCGGAGCTACGGCCCCCTGATCTGCAGCGTGGAGGTTCTTCAGTTGCCTTACTAGAAATTACAGGGGGTAAAGGTTCCGTTCAAGTTAATGGCAAGACTTACCGAAGGAATGCCCGTTTGATTTTAAGTGGAGGTGATGAGGTGGTCTTTGGTTCTTCTGGCAAACATGCTTATATCTTTCAGCAGCTCAAAAATAATAATATAACTACTTCCGGTGTACCTTCTGTGAGTATTTTAGAAGCCCAAAGTGCTCCAATAAATGGAATGCAAGTTGAAGCTAGATCTGGAGACCCTTCAGCTGTAGCTGGAGCATCAATATTGGCCTCTTTATCTAATCTTCATAAAGATCTATCTCTCCTTCCACCTCCTGCTAAAACTTGCAAGAATGTGCAACAAAATGCTGATATTTCATCACTCCCTTCTGGCCATGGTGATGATGTTCCAGACAATGAAATGAAGGATGGCACCAATAATGGTGAACCTGATGGATCCTTTTCTGCGGAGAAAACTGTTCTTGCATCCTCTACCACTGTTAATGAAAATCCTAGCCTTGATACCTTGGAAGTCGATGCCAATGTGGATGCAGATGGTGGGAAGATGACTGCTGCTACCTGCGAATTGAGGCCATTACTGCGCATGCTTGCTGGTTCATGTCCTGAATTTGATTTAAGTGGTAGCATTTCCAAGATATTGGAAGAGCGAAGGGAATTAAGAAAACTCCTTAAAGATGTTGATACCCCAACAATATTGGCATCGACCAGGCGACAAGCATTCAAGGAAAGTTTACAACAGAGAATTCTCAGTGCTGAGAATATTGATGTCTCATTTGAAAATTTCCCGTATTACCTAAGTGATACGACAAAGAATGTTTTGATTGCATCTACATATATTCATTTGAAGTGCAATGGCTTTGGAAAATATGCTTCAGACCTCCCGTCAGTGTCTCCACGGATATTGTTATCTGGTCCTGCAGGTTCGGAAATATATCAGGAGACTTTGTCCAAGGCCCTTGCGAAGCATTTTGGTGCCAAGCTACTAATTGTGGATTCTCTTTCACTGCCTGGTGCAGCACCATCAAAGGAAATTGATTCCACTAAAGAAAGTTCAAGGCCTGAAAGACCATCCGTGTTTACTAAGAGAAGTACCCCAGCTACTACAGTACAATATAAGAAACCAACTTCTAGTGTTAATGCTGAAATTATTGGTGGATCCACATTAAGTTCTCAGACTATGCTGAAGCAAGAGGTTTCTACTACATCATCAAAAGGCAATACTCTTAAAACAGGTGATCGAGTAAAATTTGTTGGTAACATTCCTTGTCCTGTCTCATCGCTACAAAATTATTCTCCAAGGGGACCTAGCTATGGCTCCCGGGGAAAAGTTCTCCTTGCTTTTGAAGATAACGGGTCTTCAAAAATTGGGGTTAGATTTGATAAATCAATTCCTGATGGCAATGATCTTGGAGGCCTTTGTGAAGATGATCGTGGATTCTTTTGTTCTGAGAAGGCAATGGTTGGGAACTCAGAAATTTTGAAAAGTAAATTTGAAAGCTTGCCTCAGAATGTTGTAGTAATTGGCTCACACATCCAGCTGGACAATCGTAAGGAGAAGACCCAACCTGGCAGCCTTCTGTTCACAAAGTTTGGGAGTAATCAGACAGCATTACTCGATCTTGCTTTCCCGGATAGCTTTAGTAGACTGCATGATAGGAACAAAGAAACCCCCAAAGTTATGAAGCAACTTAGTCGCCTTTTCCCAAACAGAGTGACAATACAGCTGCCTCAGGGCATTCAAAATGAGAACAAGAACTTGAAAAAATCACTAAAGGATGTGGTTACTGAGAATGAATTTGAGAAAAAACTGCTTGCTGATGTTATTCCACCAACTGATATTGGAGTCAAATTTGATGATATTGGAGCTTTAGAAAATGTGAAGGACACCTTAAAGGAATTGGTCATGCTTCCTCTTCAGAGGCCTGAATTGTTTGGCAAAGGACAGCTGACAAAGCCTTGCAAGGGAATATTGCTTTTTGGGCCTCCTGGCACAGGAAAAACAATGCTTGCAAAGGCTGTAGCAACTGAAGCTGGAGCAAATTTTATTAACATTTCGATGTCCAGCATTACTTCAAAGTGGTTTGGTGAAGGAGAAAAATATGTCAAAGCAGTCTTTTCTCTGGCCAGCAAAATTGCCCCAAGCGTTATTTTTGTTGATGAGAACGTATTCATGGCTTGCAATGTGATGGGGAGAACAATAGGAGGCTTCAAGGTTGATAGTATGTTAGGGAGACGGGAAAATCCTGGTGAGCATGAGGCTATGCGTAAAATGAAGAATGAGTTTATGGTTAATTGGGATGGTCTGCGTACAAAAGATAGAGAGCGTGTACTTGTTCTTGCTGCTACAAACAGGCCATTTGATCTGGATGAGGCTGTTATTAGGAGGCTTCCGCGAAGATTGATGGTTAGTTTGCCAGATGCAACAAACAGAGAAAAAATTCTTAGAGTCATTTTAGCGAAAGAAGATTTAGCGCCTGATGTTGATTTGGATGCAATAGCAAATATGACTAATGGATATTCAGGAAGTGACCTAAAGAATCTGTGTGTCACTGCAGCTCACTGTCCAATAAGAGAGATCTTGGAGAAGGAAAAGAGGGAGAGAAGCTTGGCATTGGCTGAGAACAAACCTTTGCCTGCATTGTGTAGTGGTGCCGACATTCGTCCCTTAAAGATGGAGGATTTTAGATATGCACATGAGCAGGTGTGTGCAAGCGTGTCATCAGAGTCATCAAATATGAATGAGCTACTCCAATGGAATGACCTCTATGGAGAAGGTGGATCGAGAAAAATGAGATCTTTGAGCTACTTCATTTCAAGCTTCCTCTTTCCACCGCCGGAGAAAAATCAAGAGAAGGATTCCATAATAATAGACCACCGCTATGCTCTTGTCATTCTCAACCAACCCCTCCCGAGATTCGCTCCTCTGCTTTGGGACCACGCACAGCTACGACTCTGCGCAGATGGAGGTGCCAACCGTCTCTATGATGAAATGCCTCTTCTCTTGTCTCCTCAACTTGATTCTTCTCTTGCTCCACCCAGGTACAAGCCTGATGTAATCAAAGGTGACATGGATTCAATTCGGACTCCAGTTCTTGACTTCTATAAAAAGCTGGGAACTAAAATAATAGATGAATCTCATGATCAGAATACCACTGATTTACACAAATGTATAGCATACATTCGTGACCACACACCAGATATTGATAAATCAAAATTATGCATTCTTGTTGTTGGAGCACTTGGAGGACGATTTGACCATGAAATTGGAAATATCAATGTGCTTTGCCATTTCTCTGACACTCGAATTATCCTTCTGTCTGATGATAGCCTCATTTACCTGCTTCCAAAGAATCACTGTCATAAGATATTTATTCAATCTTCTGTGGAGGGTCCACATTGTGGACTAATTCCCATTGGGGTACCCTCTGGAAGTTCTACAACCACAGGGCTCCAATGGAACCTTAGTAAGTAG 3696 0.4237 MVETRRGSSTSKRALSSPSPPNTKRSKVSEDASSTNLPSTGIIAPVNESGTRNESGEPELRPPDLQRGGSSVALLEITGGKGSVQVNGKTYRRNARLILSGGDEVVFGSSGKHAYIFQQLKNNNITTSGVPSVSILEAQSAPINGMQVEARSGDPSAVAGASILASLSNLHKDLSLLPPPAKTCKNVQQNADISSLPSGHGDDVPDNEMKDGTNNGEPDGSFSAEKTVLASSTTVNENPSLDTLEVDANVDADGGKMTAATCELRPLLRMLAGSCPEFDLSGSISKILEERRELRKLLKDVDTPTILASTRRQAFKESLQQRILSAENIDVSFENFPYYLSDTTKNVLIASTYIHLKCNGFGKYASDLPSVSPRILLSGPAGSEIYQETLSKALAKHFGAKLLIVDSLSLPGAAPSKEIDSTKESSRPERPSVFTKRSTPATTVQYKKPTSSVNAEIIGGSTLSSQTMLKQEVSTTSSKGNTLKTGDRVKFVGNIPCPVSSLQNYSPRGPSYGSRGKVLLAFEDNGSSKIGVRFDKSIPDGNDLGGLCEDDRGFFCSEKAMVGNSEILKSKFESLPQNVVVIGSHIQLDNRKEKTQPGSLLFTKFGSNQTALLDLAFPDSFSRLHDRNKETPKVMKQLSRLFPNRVTIQLPQGIQNENKNLKKSLKDVVTENEFEKKLLADVIPPTDIGVKFDDIGALENVKDTLKELVMLPLQRPELFGKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDENVFMACNVMGRTIGGFKVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDRERVLVLAATNRPFDLDEAVIRRLPRRLMVSLPDATNREKILRVILAKEDLAPDVDLDAIANMTNGYSGSDLKNLCVTAAHCPIREILEKEKRERSLALAENKPLPALCSGADIRPLKMEDFRYAHEQVCASVSSESSNMNELLQWNDLYGEGGSRKMRSLSYFISSFLFPPPEKNQEKDSIIIDHRYALVILNQPLPRFAPLLWDHAQLRLCADGGANRLYDEMPLLLSPQLDSSLAPPRYKPDVIKGDMDSIRTPVLDFYKKLGTKIIDESHDQNTTDLHKCIAYIRDHTPDIDKSKLCILVVGALGGRFDHEIGNINVLCHFSDTRIILLSDDSLIYLLPKNHCHKIFIQSSVEGPHCGLIPIGVPSGSSTTTGLQWNLSK 1231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi293g00014 1231 Pfam ATPase family associated with various cellular activities (AAA) 731 795 IPR003959 GO:0005524|GO:0016887
Sebi293g00014 1231 Pfam ATPase family associated with various cellular activities (AAA) 813 877 IPR003959 GO:0005524|GO:0016887
Sebi293g00014 1231 Pfam AAA+ lid domain 901 937 IPR041569 -
Sebi293g00014 1231 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 689 882 - -
Sebi293g00014 1231 SUPERFAMILY Thiamin pyrophosphokinase, substrate-binding domain 1186 1230 IPR036371 GO:0009229
Sebi293g00014 1231 Gene3D Thiamin pyrophosphokinase, catalytic domain 1033 1231 IPR036759 GO:0004788|GO:0005524|GO:0009229
Sebi293g00014 1231 Gene3D - 689 985 IPR027417 -
Sebi293g00014 1231 CDD TPK 1036 1230 IPR007371 GO:0004788|GO:0005524|GO:0009229
Sebi293g00014 1231 SMART AAA_5 727 881 IPR003593 GO:0016887
Sebi293g00014 1231 Gene3D - 880 974 - -
Sebi293g00014 1231 MobiDBLite consensus disorder prediction 1 53 - -
Sebi293g00014 1231 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 690 986 IPR027417 -
Sebi293g00014 1231 Pfam Thiamin pyrophosphokinase, catalytic domain 1050 1176 IPR007371 GO:0004788|GO:0005524|GO:0009229
Sebi293g00014 1231 MobiDBLite consensus disorder prediction 1 68 - -
Sebi293g00014 1231 SUPERFAMILY Thiamin pyrophosphokinase, catalytic domain 1032 1183 IPR036759 GO:0004788|GO:0005524|GO:0009229
Sebi293g00014 1231 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 313 1011 - -
Sebi293g00014 1231 MobiDBLite consensus disorder prediction 192 223 - -
Sebi293g00014 1231 Pfam Thiamin pyrophosphokinase, vitamin B1 binding domain 1195 1230 IPR007373 GO:0009229|GO:0030975
Sebi293g00014 1231 NCBIfam thiamine diphosphokinase 1037 1230 IPR006282 GO:0004788|GO:0006772
Sebi293g00014 1231 FunFam Thiamine pyrophosphokinase 1033 1176 - -
Sebi293g00014 1231 MobiDBLite consensus disorder prediction 415 444 - -
Sebi293g00014 1231 ProSitePatterns AAA-protein family signature. 851 870 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi293g00014 Sebi-Chr293 164879 206112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi293g00014 690 955 Calmodulin-binding Proteins AT3G56690 37.729 3.38e-39 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi293g00014 - - gmx:100801477 919.457