Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi293g00004 ATGCAAAAATCTCCAAAGAAGCTAAAGAAACGATTGCAAGAGTGTGTCTCTGAGTTTGTTAGCTTTGTGACTGGGGAAGCTTCTGATAAGTGCCACAAGGAGAAGAGGAAGACTGTGAATGGAGATGATATTTGCTGGGCCTTGGCTACCTTAGGGTTTGATGACTACGCTGAGCCACTCAAAAGGTATTTGCATCGCTATAGGGAATTGGATGGGGAAAGAGCCAATCAAAGTAAGGCCAATGAAGAAAACAATATTGAAACTTATAACTATGAAGGTAAGCTACCATCTTCTTCTTCTTCTACCCCAATAGTGATGTTTAATGTCACTGATAGGAGCAGCAGTGGCCCTCAGTCCAGGGGATTTTGA 369 0.4255 MQKSPKKLKKRLQECVSEFVSFVTGEASDKCHKEKRKTVNGDDICWALATLGFDDYAEPLKRYLHRYRELDGERANQSKANEENNIETYNYEGKLPSSSSSTPIVMFNVTDRSSSGPQSRGF 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi293g00004 122 MobiDBLite consensus disorder prediction 72 122 - -
Sebi293g00004 122 MobiDBLite consensus disorder prediction 81 122 - -
Sebi293g00004 122 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 5 90 IPR027113 GO:0001228|GO:0006355|GO:0016602
Sebi293g00004 122 PRINTS CCAAT-binding transcription factor subunit A signature 12 30 - -
Sebi293g00004 122 PRINTS CCAAT-binding transcription factor subunit A signature 50 68 - -
Sebi293g00004 122 PRINTS CCAAT-binding transcription factor subunit A signature 31 49 - -
Sebi293g00004 122 SUPERFAMILY Histone-fold 6 87 IPR009072 GO:0046982
Sebi293g00004 122 Gene3D Histone, subunit A 3 98 IPR009072 GO:0046982
Sebi293g00004 122 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 10 48 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi293g00004 Sebi-Chr293 53036 53404 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi293g00004 3 77 CCAAT-HAP3 Transcription Factor Family AT2G47810 76.000 4.72e-40 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Sebi293g00004 CBFD_NFYB_HMF 8.4e-13 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi293g00004 K08065 - vvi:104879763 164.466