Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi293g00001 ATGTCAAATGTTTCAGGTGATGAAGTTAGTTTCTCCTCAGCAAACACTGTGGAAGAAGTTCATCAAGAAAAGGAGCAACAACAACCACAAAACCACCCTCATGGCTCAAGTTCAGGACCTTCTGGTGTTTCTAACAGCAATAGCTCCTCTAATCAACAACAACAAGAAGCAACCAAGAAGAAAAGAAGCCTACCTGGAACCCCAGGCAAATATTCAACCCTGTCTTTCAGTTTTATGTACACTAGCTCTACTGGTCAAACTCTAGAAGTAGATCCAAATGCTGAAGTTATTGCTTTATCACCAACCACATTAATGGCAACAAATAGATTCGTCTGTGAGATCTGCAATAAAGGGTTTCAGAGGGACCAAAACCTTCAGTTGCACCGCAGAGGTCACAATCTTCCATGGAAACTGAGGCAGAGAACAACCAATGAGGTGAAGAAAAGGGTGTATGTGTGTCCTGAACCATCATGCGTTCACCATAACCCTGCTCGTGCATTAGGAGACCTCACTGGCATTAAAAAACATTACAGCAGAAAACATGGTGAGAAGAAATGGAAATGTGATAAATGCTCTAAAAAATATGCAGTCCAATCTGATTGGAAGGCTCACCAGAAAACATGTGGTACCAAAGAATACAAATGTGATTGCGGAACCATATTTTCCAGGAGAGATAGTTTTATCACTCACAGAGCATTTTGTGACGCATTGACTGAAGAAAACAACAGAGTGAACCAGGGATTAACAAGTGGCATGGCATCAAACATGCAAAATGAAATACAGCTGGATCCTATGGCTACAATGCCTCTAAGCACTAGTTCCAACACTGTATCTGAATTCAACAACTACGATCCTAAGAACCCTCTTAAAACCCTCTCCCAAGAACTTCTCCCAATTCCATTCAAGTCCATGAGTATGGTTGGGGGCAGCATGTTCTCCACTTCATCAGGTACACTTTTTGGTGGTCCAAGAAGCTTATCTCCCTCTTCTTCCAGCCTTCAACTCAGTTCCAACAACAACAACAACTCCCCTGGTTTCAATTACTTCCAAGACAACAAAAATGGAGGCCTAATTTCTGGCTCAGCTCAAATGTCTGCAACAGCTTTATTACAGAAGGCAGCCCAAATGGGTGCCACTGCAAGCAATAGCATGAACTCTCCCATGATGCAAAAAAGCTTTGTTTGTGGCATGGTTGGTCCTGACACTGTCTCTTCTCCTAGAACACCATATTCTGGTGCTATCCAGCAGCATAACTCTTCCTTTGACCATTTCCATCCTCACACTGATCAATGTCACATGGCTGGTGTTAGTGGTGGTGGAGCTTTCACCAACCAATTTTTTCAGAGAGGGCAACAAGAAATGCCATTAATATTTGATTCTAACACAGCTGGTTCAACAATGAGTGAAATGGGAATGTTCAGCCCAATGTTCATGGGAAGTGACAACAATCCTGGCTTGATGAAGAATGTGGAACAGGAAGTAGCAGAAGGAAACCCAATGAGGCCATCAAGGTTTGGAGGTAGTGACACTGACATGACCACAGTTCATGACTTTTTGGGTGTTGGGGGTTCAACTTCAAGAGAAACGAGTTTGCATGAACCACAAAAACAACAACAGCAAAGGTTCGAGTTTGAAGCATCTCACCAGAGGTTGCCAAACTTTCACCACCACCTTCAGTTATGGAGAAACCAATTCGAGACATTTGAGAGCTGCCACAGACCATGA 1725 0.4296 MSNVSGDEVSFSSANTVEEVHQEKEQQQPQNHPHGSSSGPSGVSNSNSSSNQQQQEATKKKRSLPGTPGKYSTLSFSFMYTSSTGQTLEVDPNAEVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTTNEVKKRVYVCPEPSCVHHNPARALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHQKTCGTKEYKCDCGTIFSRRDSFITHRAFCDALTEENNRVNQGLTSGMASNMQNEIQLDPMATMPLSTSSNTVSEFNNYDPKNPLKTLSQELLPIPFKSMSMVGGSMFSTSSGTLFGGPRSLSPSSSSLQLSSNNNNNSPGFNYFQDNKNGGLISGSAQMSATALLQKAAQMGATASNSMNSPMMQKSFVCGMVGPDTVSSPRTPYSGAIQQHNSSFDHFHPHTDQCHMAGVSGGGAFTNQFFQRGQQEMPLIFDSNTAGSTMSEMGMFSPMFMGSDNNPGLMKNVEQEVAEGNPMRPSRFGGSDTDMTTVHDFLGVGGSTSRETSLHEPQKQQQQRFEFEASHQRLPNFHHHLQLWRNQFETFESCHRP 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi293g00001 574 SMART c2h2final6 186 206 IPR013087 -
Sebi293g00001 574 SMART c2h2final6 151 181 IPR013087 -
Sebi293g00001 574 SMART c2h2final6 110 132 IPR013087 -
Sebi293g00001 574 FunFam protein indeterminate-domain 12-like 89 157 - -
Sebi293g00001 574 MobiDBLite consensus disorder prediction 1 17 - -
Sebi293g00001 574 Gene3D Classic Zinc Finger 165 244 - -
Sebi293g00001 574 SUPERFAMILY beta-beta-alpha zinc fingers 109 207 IPR036236 -
Sebi293g00001 574 ProSitePatterns Zinc finger C2H2 type domain signature. 112 132 IPR013087 -
Sebi293g00001 574 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 37 542 IPR031140 -
Sebi293g00001 574 FunFam protein indeterminate-domain 5, chloroplastic-like 164 243 - -
Sebi293g00001 574 Gene3D Classic Zinc Finger 90 155 - -
Sebi293g00001 574 MobiDBLite consensus disorder prediction 320 348 - -
Sebi293g00001 574 MobiDBLite consensus disorder prediction 1 68 - -
Sebi293g00001 574 MobiDBLite consensus disorder prediction 29 61 - -
Sebi293g00001 574 Pfam Zinc finger, C2H2 type 110 132 IPR013087 -
Sebi293g00001 574 ProSiteProfiles Zinc finger C2H2 type domain profile. 110 132 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi293g00001 Sebi-Chr293 16333 19087 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi293g00001 38 381 IDZ Gene Family AT3G50700 51.366 2.43e-108 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi293g00001 zf-C2H2 0.0059 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi293g00001 - - gmx:100779705 695.271