Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi292g00023 ATGAGAGGCCAAAGTAATGGAATGGCAGATCTTGCTAGTCATGGGATTCTTGAGCGTGATATTGAGCAAGCACTCATTGCTTTAAAGAAAGGGACTCAATTAATAAAGTATAGTCGAAAGGCCAAGCCAAAAGTTTGCCCATTCAGACTCTCCCTGGATGAAACGACATTGATTTGGATTTCTCATAAAAAGGAAAGGAATTTGAAATTATCTTCAGTTTCACGTATTATTCCGGGACAAAGAACTGCTGTCTTTAGAAGATATTTACAACCAGAAAAAGATTATCTTTCATTTTCACTTGTTTATAATAAAGGGGAGCGGACACTTGATCTGATATGCAAGGACAAAGCTGAGGCAGAGGATGGTGTTGATTTTATTTCGATTAGTCGGCCTTTTGGTGCAGCACTAGAGTTTGCTTCAAGCATTGCTCGTGGTAGGGTCTCTATTGATTTAGCTTCTAGTGAGTCTTCATTGTGTTGGGCAAGCCCAGATGTGGGGTTAGAACGTGCAAATATGCAACCAAGGACAAGTATTGGAGATGGTTTTCGTGTTAGTGTTTCAAGTGCACATAGTTGTTCAAGTGGAGGATCAGGACCTGATGACATAGAGTCACTAGGTGATGTTTACATATGGGGAGAAGTTTGGGTGGATGGTGCTTCACCTGATGCATATGGCACTACTCCAACCCCTTCCACAATAGATGTTTTGATTCCTAAGCCTTTAGAGTCAACTGTTGTTCTTGATGTTCAACAAATTGCATCTGGTGTACGTCATATGGCTCTAGTTACTAGGCAAGGAGAGGTTTTCACTTGGGGAGAGGAATCTGGTGGAAGATTAGGTCATGGAATTGATAAAGATTTTGGTCGCCCTCAACTTGTTGAGGTTCTGGCGGTTACAAATATAGAGACAGTTGCATGTGGAGAAAATCATACATGTGCTGTATCTATATCAGATGACCTTTATTCATGGGGTGATGGTGCATATAATGTTGGACTTCTTGGCCATGGCACTGATGTTAGTCATTGGATACCAAAGAGGATTAGTGGTCCTTTGGAAGGACATCAAGTTATATCTATAGCATGTGGCACATGGCATTCAGCATTAGCAACTTCCAATGGAAAACTTTTTACCTTTGGTGATGGAACATTTGGTGTATTGGGTCATGGAAATAGAGAGAGTGTGCCTTATCCTAAGGAAGTACAGTTATTAAGTGGATTGAAGACTATTAAGGTTGCATGTGGAGTATGGCATACAGCAGCTATTGTAGAGGTTATTTTTCAGTCTGGTTCAAGTGTTTCATCTAGAAAGCTTTTCACTTGGGGAGATGGTGATAAATATCGTTTGGGACATGGAAACAAGGAAACATATCTTCAACCTACTTGTGTCTCTGCATTGATTGAATATAATTTCCACCAAATAGCTTGTGGACATACTATGACTGTTGCCCTTACTACATCTGGTCATGTGTTTACTGTTGGAGGCACTGAAAATGGTCAACTTGGAAATCCTTTATCTGATGGTAAAATTCCTATCTTAGTACAAGACAAGTTGGTGGGTGAATTTGTTGAGGAAATATCATGTGGGGCCCATCATGTTTCTGCCTTAACATCAAGAAGTGAACTGTATACTTGGGGGAAAGGTGCTAATGGAAGATTGGGACATGGAGACATAGAGGATAGAAAATCTCCAACATTGGTGGAAGCATTGAAAGATAGGCATGTGAAAAATATATCATGTGGATCAAACTTCACATCTTGTATATGTATCCATAAATGGGTCTCTGGAGTTGACCAATCTGCTTGTACTGGTTGCAGACAACCATTTGGTTTTACAAGAAAAAGGCATAATTGTTATAATTGTGGATTAGTACATTGTCATGGTTGTAGTTCAAGAAAGGTATTGAAAGCAGCATTGGCTCCAACACCTGGAAAACCTCATCGTGTGTGTGATTCTTGTTACAATAAACTTAAAGCTGTTGAGGCAGGTACAGCTACTTCCAATTTTAATAGAAAAGTCACTACCCAACCTCGTAGTTCCATAGATGGAAAGGAAAGATTATTTGGTCAAGGAGAAATAAGATCTTCAAGAATTTTTCTGTCTTCTATGGCAGAACCACTAAAATTCCTTGAGATGAGCACTAATAATAAGCATGGAAACAAGTATGATTATTCTTCCATGGTTCCTACTTCTCAAGTTCCATCACTTTTACAATTGAAAGATATCTCCATTCAAAATGTTCTGAAGCCTGTTATTCCTCCAAGTCCACCACCAACTCCACCTCTTAATTCAAGACCAACATCCCCTTATCCAAGAAGGCCAAGCCCACCACGTTCTGGAACTCCTGGATTTTCTAGAAGTCTTATTGATAGTTTGAGGAAGACTAATGAGATTTTGAACCAAGAAGTCTCAAAATTACAGAACCAAATTCGAAGTTTGAAGCAGAAAAGTGACATGGAAATTCAGAAGCTTCAGAAAAACATTAAGGAAGGTAACTTGTTAGCTACAAAGGAATCATCTAAGCAGAAAGCAGCGAAAGAATTTTTTGACTCCATGATAGATCAGTTGAAGGAAATAGCAGATAAGTTACCACCAGAAGTTTCAGATACCGAAAATTTCAAAACCATGCTTACTCGAGCTGAAGATTTTCTAAAAGAACATTTAGAATCTAAAACATCTTCCTCACCATCAAACTCGGAATGTCAGCAACAAAATGCACCTGCTTTAAATAGTTCCTCTTCTAAACTGCAAGAACATAGAATAGAAGAAACTAATGAAGCTGCAGGAGTTGACTCATCTCAAGATGGCGGGAATGTCCTTCAAGAAAGTGATAAATCATCGTTATCTAATAATGAAGCAGTAGTGCATCCACAAAGCTCTGAAAATGATTCAAAATCACTAGAGTCTTCAAGATCAAGGAGAGAAGGAGAGACACAAGTCATTGAACAATTTGAACCTGGTGTTTATGTGACACTAATAGTAAAGCCTGGTGGTATCAAAGTTTTCAAACGAGTGAGATTCAGTAAACGAAGATTCCATGAACATCAAGCAGAAGAATGGTGGAACAAAAACAAAGATAGGGTGCTTAGGAAATATAGTCCTCAAGCTACAAATCCCGAAAGCACAGTGTCTGGCATCCCACCACCTAGTGATGAAAATTGTGAGGCAGACCTTTCATAA 3177 0.3906 MRGQSNGMADLASHGILERDIEQALIALKKGTQLIKYSRKAKPKVCPFRLSLDETTLIWISHKKERNLKLSSVSRIIPGQRTAVFRRYLQPEKDYLSFSLVYNKGERTLDLICKDKAEAEDGVDFISISRPFGAALEFASSIARGRVSIDLASSESSLCWASPDVGLERANMQPRTSIGDGFRVSVSSAHSCSSGGSGPDDIESLGDVYIWGEVWVDGASPDAYGTTPTPSTIDVLIPKPLESTVVLDVQQIASGVRHMALVTRQGEVFTWGEESGGRLGHGIDKDFGRPQLVEVLAVTNIETVACGENHTCAVSISDDLYSWGDGAYNVGLLGHGTDVSHWIPKRISGPLEGHQVISIACGTWHSALATSNGKLFTFGDGTFGVLGHGNRESVPYPKEVQLLSGLKTIKVACGVWHTAAIVEVIFQSGSSVSSRKLFTWGDGDKYRLGHGNKETYLQPTCVSALIEYNFHQIACGHTMTVALTTSGHVFTVGGTENGQLGNPLSDGKIPILVQDKLVGEFVEEISCGAHHVSALTSRSELYTWGKGANGRLGHGDIEDRKSPTLVEALKDRHVKNISCGSNFTSCICIHKWVSGVDQSACTGCRQPFGFTRKRHNCYNCGLVHCHGCSSRKVLKAALAPTPGKPHRVCDSCYNKLKAVEAGTATSNFNRKVTTQPRSSIDGKERLFGQGEIRSSRIFLSSMAEPLKFLEMSTNNKHGNKYDYSSMVPTSQVPSLLQLKDISIQNVLKPVIPPSPPPTPPLNSRPTSPYPRRPSPPRSGTPGFSRSLIDSLRKTNEILNQEVSKLQNQIRSLKQKSDMEIQKLQKNIKEGNLLATKESSKQKAAKEFFDSMIDQLKEIADKLPPEVSDTENFKTMLTRAEDFLKEHLESKTSSSPSNSECQQQNAPALNSSSSKLQEHRIEETNEAAGVDSSQDGGNVLQESDKSSLSNNEAVVHPQSSENDSKSLESSRSRREGETQVIEQFEPGVYVTLIVKPGGIKVFKRVRFSKRRFHEHQAEEWWNKNKDRVLRKYSPQATNPESTVSGIPPPSDENCEADLS 1058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi292g00023 1058 Pfam Regulator of chromosome condensation (RCC1) repeat 437 483 IPR000408 -
Sebi292g00023 1058 Pfam Regulator of chromosome condensation (RCC1) repeat 540 587 IPR000408 -
Sebi292g00023 1058 Pfam Regulator of chromosome condensation (RCC1) repeat 372 421 IPR000408 -
Sebi292g00023 1058 Pfam Regulator of chromosome condensation (RCC1) repeat 486 535 IPR000408 -
Sebi292g00023 1058 Pfam Regulator of chromosome condensation (RCC1) repeat 266 314 IPR000408 -
Sebi292g00023 1058 Pfam Regulator of chromosome condensation (RCC1) repeat 319 368 IPR000408 -
Sebi292g00023 1058 PRINTS Chromosome condensation regulator RCC1 signature 534 555 IPR000408 -
Sebi292g00023 1058 PRINTS Chromosome condensation regulator RCC1 signature 318 334 IPR000408 -
Sebi292g00023 1058 PRINTS Chromosome condensation regulator RCC1 signature 476 494 IPR000408 -
Sebi292g00023 1058 PRINTS Chromosome condensation regulator RCC1 signature 359 375 IPR000408 -
Sebi292g00023 1058 PRINTS Chromosome condensation regulator RCC1 signature 375 389 IPR000408 -
Sebi292g00023 1058 PRINTS Chromosome condensation regulator RCC1 signature 268 284 IPR000408 -
Sebi292g00023 1058 Coils Coil 788 822 - -
Sebi292g00023 1058 MobiDBLite consensus disorder prediction 749 777 - -
Sebi292g00023 1058 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 373 424 IPR000408 -
Sebi292g00023 1058 ProSiteProfiles BRX domain profile. 977 1032 IPR013591 -
Sebi292g00023 1058 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 539 590 IPR000408 -
Sebi292g00023 1058 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 487 538 IPR000408 -
Sebi292g00023 1058 CDD PH_PLC_plant-like 19 120 - -
Sebi292g00023 1058 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 595 657 IPR017455 -
Sebi292g00023 1058 FunFam PH, RCC1 and FYVE domains-containing protein 1 177 426 - -
Sebi292g00023 1058 CDD FYVE_like_SF 600 653 - -
Sebi292g00023 1058 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 266 317 IPR000408 -
Sebi292g00023 1058 MobiDBLite consensus disorder prediction 889 914 - -
Sebi292g00023 1058 Pfam Transcription factor BRX N-terminal domain 837 872 IPR027988 -
Sebi292g00023 1058 SUPERFAMILY FYVE/PHD zinc finger 591 660 IPR011011 -
Sebi292g00023 1058 SUPERFAMILY RCC1/BLIP-II 205 592 IPR009091 -
Sebi292g00023 1058 SUPERFAMILY PH domain-like 20 121 - -
Sebi292g00023 1058 SMART fyve_4 589 658 IPR000306 GO:0046872
Sebi292g00023 1058 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 411 421 IPR000408 -
Sebi292g00023 1058 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 604 663 IPR013083 -
Sebi292g00023 1058 MobiDBLite consensus disorder prediction 747 786 - -
Sebi292g00023 1058 MobiDBLite consensus disorder prediction 1033 1047 - -
Sebi292g00023 1058 Gene3D - 19 128 IPR011993 -
Sebi292g00023 1058 Pfam Transcription factor regulating root and shoot growth via Pin3 977 1031 IPR013591 -
Sebi292g00023 1058 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 64 847 - -
Sebi292g00023 1058 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 318 372 IPR000408 -
Sebi292g00023 1058 MobiDBLite consensus disorder prediction 1031 1058 - -
Sebi292g00023 1058 MobiDBLite consensus disorder prediction 926 964 - -
Sebi292g00023 1058 MobiDBLite consensus disorder prediction 886 978 - -
Sebi292g00023 1058 Gene3D - 432 603 IPR009091 -
Sebi292g00023 1058 Gene3D - 182 431 IPR009091 -
Sebi292g00023 1058 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 435 486 IPR000408 -
Sebi292g00023 1058 Pfam FYVE zinc finger 591 657 IPR000306 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi292g00023 Sebi-Chr292 886655 892910 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi292g00023 974 1056 Major Intrinsic Protein MIP AT1G31880 33.735 3.24e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi292g00023 - - gmx:100779684 1566.59