Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi292g00017 ATGGGTTCAAAGGAACGAAGAAGAGTGGCTCTTCAACAACTTCGACATGTCACAAACTCTAGTGCTTTGAACAAAGCCTCAATTATTGTGGAGGCTTCCAAATACATACAAGAGTTGAAGCAGAAAGTGGAGGGATTGAACTCGGAGCTAGGAATCGCTGAGTCATCAACTACTACTCAAATCGATGAACTACCTATGGTAAGTGTGAAAACCCTAAAAAGGGGTTTCCTCATTAATGTGTTTTTAGAAAAGAATTGCCCTGGTGTGCTTGTCTCAATACTTGAAGCCTTTGAAGAACTTGGACTTGATGTGCTAGATGCTAGGGTTTCTTGTGAAGACACTTTCCAGCTAGAAGCTGTAGGAGGAGAAAGTCACAAGAACCACAGTGTCGACGCGCATGTGGTGAAGCAAGCAGTGTTGAGAGCAATCAATAACACGGACTAA 444 0.4279 MGSKERRRVALQQLRHVTNSSALNKASIIVEASKYIQELKQKVEGLNSELGIAESSTTTQIDELPMVSVKTLKRGFLINVFLEKNCPGVLVSILEAFEELGLDVLDARVSCEDTFQLEAVGGESHKNHSVDAHVVKQAVLRAINNTD 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi292g00017 147 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 5 54 IPR036638 GO:0046983
Sebi292g00017 147 ProSiteProfiles ACT domain profile. 78 147 IPR002912 -
Sebi292g00017 147 Coils Coil 29 56 - -
Sebi292g00017 147 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 9 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi292g00017 Sebi-Chr292 482657 484145 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi292g00017 21 141 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 30.000 5.56e-06 42.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi292g00017 - - gmx:100527466 233.802