Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi292g00005 ATGCCCTCATGTCCGGCGCCCGCGCCGCCGCCGCCAAGAAGAAGCAACAGCCATCCTCATCCCCCAGGAAAAGAAAATCCCCTCACTCCCCCTCTCCCGCCCAAAACCCTAACAACCTCAAAACCCCCGAAACCGTCCAACAACCCAACATATCACCGGATACCGTTGAAACTGTTCAACAGCTCAACAAATCACCGGAAACTGTTGAAAACCGTTCAACAGCCCAACAAACCATCTCAGGAAACCGCCAAGGCTGAACCTCCGAACAAGATTAGCAAAGTGTCTTTTTCCCGGGAGATAATCGCTAAGCTGAAGGAGCGGGTTCCGCGGCTGAAGAAGAAGCCCTCAGAGTTCGATCCTAGCTCGGTTACGTGTTGGGAGAAAGGCCAACCCGTGCCCTTCTTGTTCCTCTCCTTGGCGTTCGACATGATCGCTGAGGAGACTGGGCGAATTGTGATTACGGACATTGTGTGCAACCTGTTGAGGACTGTGATTCACGCCACTCCGGAGGATCTCGTGCCGGTTGTTTATCTCTCAGCGAACAGGATTGCTCCAGCGCACGAAGGGTTGGAATTGGGAATCGGAGACGCTTCCATTATCAAGGCACTTGCCGAGGCTTGTGGAAGGACTGAGTCGCAGATTAAGAATCAGTACAAGGAGAAAGGTGACTTGGGTTTAGTTGCCAAAGCGAGCCGTTCGTCTCAGTCTATGATGCGGAAGCCTGATGCATTGACTATTAGGAAGGTTTTCAACACCTTTCGCCTTATTGCCAAGGAATCTGGAAAAGACAGTCAAGAGAAGAAAAAGAATCATATAAAGTCACTTCTTGTTGCTGCAACTGACTGTGAACCTCTATATCTAATCCGTTTGCTACAGACAAAGTTGCGAATTGGATATGCTGAGCAAACTCTCTTAGCTGCATTAGGCCAAGCTGCAGTGTACACTGAAGAACATTCGAAACCACCTCCTGAAATTCAATCTCCTTTAGAAGAGGCTGCAAAGATTGTTAATCAAGTCTTTTCTGTTCTTCCTGACTATGACAAAATAGTATCTTCACTGCTTAAGGATGGTGTGTGGATACTTCCAAAGACATGTAATTTTACTCCTGGTGTTCCAGTTGGGCCTATGCTGTCAAAAGCAACCAAGGGTGTCTCTGAAGTTCTAAATAAATTCCAGGATGTTGAGTTTACCTGTGAATACAAATATGATGGGGAGCGTGCTCAGATACATTACATGGAGAATGGCTCAGTTGAGATTTACAGTAGAAATGCGGAAAGGAACACTGGGAAGTTTCCTGATGTTGTTGCTGCAGTTTCAAGGTTAAAGAAATCAACTGTATCATCATTTGTTCTTGATTGTGAACTGGTTGCATATGATCGTGCAAAACAGAAAATCCTTCCTTTCCAGGTGCTTAGTACCCGGGCTCGCAAAAATGTAACTATGAGTGACATAAAAGTTGATGTTTGTGTCTTTGCTTTTGATTTGCTGTATCTTAACGGCCAAGCACTTCTCCAGGAAAACCTGAAAATCCGTAGGGAGTTTTGCTATTCTTTGATTTGGGTTCGTAACAAGCTGCTGAGTGTAGGTTCTGGGTCAGCATCTTGCCTGTCATGGCTGGGTGGATTAAATCTCTATGCCTCTTTTGAGGAAGAATCTGGATTTCTTCAGTTTGCAACAACAATAACATCAAATGATGTTGAGGAAATACAAAAATTTCTTGACAAAGCTGTTGATGCAAGTTGTGAAGGATTGATTATTAAAACATTAAATGAAGATGCCACATATGAACCTTCCAAGCGGTCACTCAACTGGCTAAAGCTGAAAAAAGATTATCTGGAAAATATAGGGGACTCACTAGATTTGGTACCTATTGCTGCTTTCCATGGTCGTGGGAAACGCACAGGAGTCTATGGTGCCTCTCTCCTTGCTTGCTATGACAACAACAATGAAGAATTTCAAAGTATTTGTAAGATAGGAACCGGATTCTCTGAAGAAATGCTTGAAGAACGTTCTACTAGCCTTCGCGCTAAAGTGATTCCCAAGCCAAAGGCATACTATCGATATGCCGAAACAATCAATCCTGATGTCTGGTTTGAAGCTAGTGAGGTGTGGGAGGTGAAAGCTGCAGACTTGACCATTAGCCCCATTCACCGTGCTGCAGTGGGCATTGTAGATTCGGATAAGGTAGTAGAGCCGATGAATTGA 2205 0.449 MPSCPAPAPPPPRRSNSHPHPPGKENPLTPPLPPKTLTTSKPPKPSNNPTYHRIPLKLFNSSTNHRKLLKTVQQPNKPSQETAKAEPPNKISKVSFSREIIAKLKERVPRLKKKPSEFDPSSVTCWEKGQPVPFLFLSLAFDMIAEETGRIVITDIVCNLLRTVIHATPEDLVPVVYLSANRIAPAHEGLELGIGDASIIKALAEACGRTESQIKNQYKEKGDLGLVAKASRSSQSMMRKPDALTIRKVFNTFRLIAKESGKDSQEKKKNHIKSLLVAATDCEPLYLIRLLQTKLRIGYAEQTLLAALGQAAVYTEEHSKPPPEIQSPLEEAAKIVNQVFSVLPDYDKIVSSLLKDGVWILPKTCNFTPGVPVGPMLSKATKGVSEVLNKFQDVEFTCEYKYDGERAQIHYMENGSVEIYSRNAERNTGKFPDVVAAVSRLKKSTVSSFVLDCELVAYDRAKQKILPFQVLSTRARKNVTMSDIKVDVCVFAFDLLYLNGQALLQENLKIRREFCYSLIWVRNKLLSVGSGSASCLSWLGGLNLYASFEEESGFLQFATTITSNDVEEIQKFLDKAVDASCEGLIIKTLNEDATYEPSKRSLNWLKLKKDYLENIGDSLDLVPIAAFHGRGKRTGVYGASLLACYDNNNEEFQSICKIGTGFSEEMLEERSTSLRAKVIPKPKAYYRYAETINPDVWFEASEVWEVKAADLTISPIHRAAVGIVDSDKVVEPMN 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi292g00005 734 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 115 365 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Sebi292g00005 734 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 367 614 - -
Sebi292g00005 734 CDD Adenylation_DNA_ligase_I_Euk 364 611 - -
Sebi292g00005 734 MobiDBLite consensus disorder prediction 1 54 - -
Sebi292g00005 734 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 399 407 IPR016059 GO:0003909
Sebi292g00005 734 Gene3D DNA ligase/mRNA capping enzyme 375 534 - -
Sebi292g00005 734 Gene3D - 110 374 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Sebi292g00005 734 ProSitePatterns ATP-dependent DNA ligase signature 2. 582 608 IPR016059 GO:0003909
Sebi292g00005 734 Pfam DNA ligase N terminus 133 308 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Sebi292g00005 734 ProSiteProfiles ATP-dependent DNA ligase family profile. 481 646 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Sebi292g00005 734 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 72 518 - -
Sebi292g00005 734 FunFam DNA ligase 404 525 - -
Sebi292g00005 734 FunFam DNA ligase 110 377 - -
Sebi292g00005 734 CDD OBF_DNA_ligase_I 616 728 - -
Sebi292g00005 734 SUPERFAMILY Nucleic acid-binding proteins 616 727 IPR012340 -
Sebi292g00005 734 Pfam ATP dependent DNA ligase C terminal region 633 719 IPR012309 GO:0003910|GO:0006281|GO:0006310
Sebi292g00005 734 FunFam DNA ligase 613 731 - -
Sebi292g00005 734 NCBIfam ATP-dependent DNA ligase 191 721 IPR000977 GO:0003910|GO:0005524|GO:0071897
Sebi292g00005 734 Gene3D - 543 616 - -
Sebi292g00005 734 Gene3D - 617 731 IPR012340 -
Sebi292g00005 734 MobiDBLite consensus disorder prediction 1 40 - -
Sebi292g00005 734 Pfam ATP dependent DNA ligase domain 375 608 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi292g00005 Sebi-Chr292 94618 101316 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi292g00005 68 730 Core DNA Replication Machinery Family AT1G08130 67.771 0.0 941
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi292g00005 K10747 - gmx:100783155 1037.71