Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi291g00057 ATGCTAGAAAACCTCAGCGTTGCACTTAACAGTGGAAAGTACAAACCTACAATGCATGAATTTAGAATGTTCTTCAAGGGAGAGACACGAGTTACTCTGGTAAAAGATTCTTCCATTCCCCTCTATGGTTTTTCATTTGTCCCATTCGTTGAAATATTGAATGAAACTAAGGACGACAGACGTTTGGTTGATGTACTAGGTGTTGTTACTGGGAAAGGTAATCTAATTGAGTTCAAGAAAGAGGGAAAGCCATGCAACTATGTTGTCATAGAGTTGGAAAATATTGAGGGAGGTCTTAAACTTAGGTGTACTTTATGGGAGGACTATGCTTTTATGTTTTTGAAACATTTGGAAGACCATCCATCTGAGTCCTATGTTGTTGTTCTTCAATTTGCAAAAATGAAAAATTTTAAAGGGTCAGTAGGTGTTTCAAACACAACTTACAACTCTAAGTTGTTTATCAATGCCAATATTCCTGAAATTGAAGACTTTCAAATGAGGTTGAAATCTTTTGATTCTCAACAAGGTATTCAGTTTAGTCAGTTAAGTGATCATGCTTCTTTGACCCTTGAGGAAGAATTTCTTGAAAGAGGAGTGTACAAATCAATTGCTGATTTGAAAGAAAATTCTGTTTTTGTAACAATTGGGACTGTTAAGGACATTGAGTCTGAATATAACTGGTGCTATCGTGCCTGTAAGAAATGTTCTCTTGGTTTGAAGTTGGATGGGTCTATGTTCTATTGTAAAAAATGTGTCACTCATTATTCAACTTTTGTGACAAGATATTCTATTCAGCTTCGTGTAGTGGATGAGACAGATTCTGCATCTTTTATCTTATTTGATAAAGAAGCCTCAAATTTCCTGAAAATTCCTGCATATGAACTTCGCACTTCATATATTGCCAAGGGTGGAGATAAGAATAGGCATCCCGAAGAGATTGATTCCTTTAAAGATAAGAAATTCCTTTTTAAAGTGCAAGTTAAGATTCAAGATATGGAGTCAATTGTTCCTTATGTCATTAGTATTTCAAGGCTTTGTTTTGAAGATAACATTATAGCTTCCTTTGAAAAGAAATACCAAATTGAAGAGGTAGCATTAATTCAAGACAACTCTGAACTTTTGAGTCAGTTTACTGAGTCCTCAGATCTGTTGAAGGACAATTTATCTGTGTCATGTGATAATGGAGTAGATACTCCAAGTCCCCTTTTACCGACTGGAAAAACGGCATCGAATATGGATTCAAGTGTTATAAAGGTTCTTGATGTGGATCTTGCTGAGTATTGTGGAAATGCAAGTTTTGATACTCCCTCAAAATGCAAGGGTGAGATGCATTCTAAACAGACCATAGTTCGCGTTGCTGTTCATGGTGATGAACAATCTGCTAAGAAGCTGAGGAAAGTTATCAAGGAAGAGAAGAATTAG 1422 0.3586 MLENLSVALNSGKYKPTMHEFRMFFKGETRVTLVKDSSIPLYGFSFVPFVEILNETKDDRRLVDVLGVVTGKGNLIEFKKEGKPCNYVVIELENIEGGLKLRCTLWEDYAFMFLKHLEDHPSESYVVVLQFAKMKNFKGSVGVSNTTYNSKLFINANIPEIEDFQMRLKSFDSQQGIQFSQLSDHASLTLEEEFLERGVYKSIADLKENSVFVTIGTVKDIESEYNWCYRACKKCSLGLKLDGSMFYCKKCVTHYSTFVTRYSIQLRVVDETDSASFILFDKEASNFLKIPAYELRTSYIAKGGDKNRHPEEIDSFKDKKFLFKVQVKIQDMESIVPYVISISRLCFEDNIIASFEKKYQIEEVALIQDNSELLSQFTESSDLLKDNLSVSCDNGVDTPSPLLPTGKTASNMDSSVIKVLDVDLAEYCGNASFDTPSKCKGEMHSKQTIVRVAVHGDEQSAKKLRKVIKEEKN 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi291g00057 473 PANTHER OS03G0429900 PROTEIN 99 346 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sebi291g00057 473 Pfam Domain of unknown function DUF223 4 58 IPR003871 -
Sebi291g00057 473 Gene3D - 190 355 IPR012340 -
Sebi291g00057 473 SUPERFAMILY Nucleic acid-binding proteins 201 335 IPR012340 -
Sebi291g00057 473 CDD RPA1_DBD_B_like 64 169 - -
Sebi291g00057 473 Gene3D - 38 178 IPR012340 -
Sebi291g00057 473 SUPERFAMILY Nucleic acid-binding proteins 44 168 IPR012340 -
Sebi291g00057 473 CDD RPA1_DBD_C 203 330 IPR047192 -
Sebi291g00057 473 Pfam Replication factor-A C terminal domain 212 330 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi291g00057 Sebi-Chr291 953481 955739 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi291g00057 9 295 Core DNA Replication Machinery Family AT2G06510 24.375 1.73e-15 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi291g00057 - - adu:107477146 374.785