Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi291g00053 ATGACTCTTATTGCCGGTCAAAGTCCTAACTTATTGAGGTTAGTTGAGTGCTCCAATTCCATGGCCTCTAAAACCGAAAGCGAGAATTCAACCGATACAACTCCATCATCGGCAAAGAATATATACAAAGATCCAGATGATGGGCGGCAACGGTTTTTGCTTGAATTGGAATTTGTTCAATGCCTTGCTAATCCTACCTACATCCACTATTTGGCTCAGAACCGATATTTTGAGGACGAAGCATTCATTGGATACTTAAAGTATCTTCAATATTGGCAACGTCCTGAATATATTAAATTTATCATGTATCCTCACTGCCTCTATTTTCTTGAGCTTCTTCAGAATGCAAATTTTCGCAATGCAATGGCACATCCTAGCAATAAGGAACTAGCACACAGACAACAATTCTACTTCTGGAAAAACTATAGGAACAATCGGCTAAAGCACATTTTACCAAGATCACTTCCTGAACCTAGTGCAACTCCTGCACCCCCTGCTCCTACTTCAACTCCAGCTCAGGCACCTGTGCCTGCACTACCTCCAGTTCCTGCTACAAATGTTGCTGTGACAGCATCATCTACTCAAGCTCCTTCACCAATGCCATATGGTATACCCCCTGGCTCTGCTCTTGCGAAAAATGACATGAGGAATCCAACAGTTGATAGAAGGAAGAGAAAGTGA 681 0.4229 MTLIAGQSPNLLRLVECSNSMASKTESENSTDTTPSSAKNIYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPSNKELAHRQQFYFWKNYRNNRLKHILPRSLPEPSATPAPPAPTSTPAQAPVPALPPVPATNVAVTASSTQAPSPMPYGIPPGSALAKNDMRNPTVDRRKRK 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi291g00053 226 Pfam SOH1 50 142 IPR008831 GO:0003712|GO:0006355|GO:0016592
Sebi291g00053 226 MobiDBLite consensus disorder prediction 23 43 - -
Sebi291g00053 226 FunFam Mediator of RNA polymerase II transcription subunit 31 38 139 - -
Sebi291g00053 226 MobiDBLite consensus disorder prediction 153 226 - -
Sebi291g00053 226 MobiDBLite consensus disorder prediction 157 182 - -
Sebi291g00053 226 Gene3D Mediator of RNA polymerase II, submodule Med31 (Soh1) 36 139 IPR038089 -
Sebi291g00053 226 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 31 21 226 IPR008831 GO:0003712|GO:0006355|GO:0016592
Sebi291g00053 226 MobiDBLite consensus disorder prediction 23 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi291g00053 Sebi-Chr291 858364 861777 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SOH1 Sebi291g00053 Med31 1.8e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi291g00053 K15153 - gmx:100527879 340.887