Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi291g00042 ATGGAAGAGCAAGTGCAAGAGGTTAAGAAGAAGGAGGATCCCAATGCCGTTTCCAAATTCAGGATATCGGAGTCATTGAGGGCAAAATTGAAGGAGAAGGGAATCGAGTCACTATTTCCCATTCAGGCCATGACTTTCGATACCATTCTTGATGGCTCTGATTTGGTTGGTAGGGCTCGCACTGGTCAGGGTAAAACACTGGCCTTCGTGTTGCCCATATTAGAGTCTTTAACAAATGGTCCAACAAAAGCATCAAGAAAAACTGGCTATGGGAGGCCTCCCGGTGTTCTTGTGCTTTTACCTACTAGGGAATTGGCCTGTCAGGTGCATGCTGATTTTGAAGTTTATGGTGGGGCAATGGGATTGACTTCTTGTTGTTTGTATGGTGGAGCTCCATATCAAAGTCAAGAAATTAAGCTCAAGAGAGGCGTTGATATTGTTGTTGGAACACCGGGCCGCATAAAGGATCATATAGAGAGGGAAAATATTGACCTGAGCCAACTAAAGTTTCGTGTGCTTGATGAAGCAGATGAGATGCTCAGGATGGGTTTTGTTGAAGATGTTGAACTGATTCTAGTGGAGACAATGTTCTCCATGCGTCCTAAGAACATGCTCAATTTACACGTTTACCTTATAGAGCTGACTATGCTCTCTCAATATAGCACTGACTTCATCCTTGGTAAGGTAGAAAATGTTGGTAAAGTTCAGACACTTCTGTTCAGTGCTACTTTGCCAGACTGGGTTAAGCATATTGCTGCAAAATTTCTGAAGGCAGATAAGAAAACTGCTGATCTGGTTGGAAATACAAAAATGAAGGCTAGCACCAGTGTTAGGCATATTGTTCTTCCGTGTACTAGTTCTGCCAGGTCCCAGCTTATCCCAGACATTATTCGCTGTTATAGCAGTGGAGGCCGGACAATTATATTTACTGAGACAAAGGAGTCCGCTTCTCAGCTTGCAGGGTTGTTGCCTGGAGCAAGAGCTCTCCATGGTGACATACAGCAGTCACAACGTGAGGTTACATTGTCTGGCTTCAGGTCTGGGAAATTCATGACATTAGTTGCCACAAATGTGGCAGCCCGAGGTCTGGATATTAATGATGTTCAATTAATTATCCAGTGTGAACCCCCACGGGATGTAGAAGCCTATATCCATCGTTCTGGACGCACAGGAAGGGCAGGTAATACTGGAGTCGCTGTTATGCTTTATGATCCAAGAAGATCAAGTATATCTAAAATAGAAAGAGAATCGGGTGTAAAGTTTGAACATGTATCTGCCCCTCAGCCTGATGATATTGCCAAAGCTGTTGGTGGGGAAGCTGCTGAAATGATTACCCAAGTGTCTGATAGTGTGATTCCTGCATTCAAGTCTGCTGCTGAGGAGCTTTTGAACAACTCTGGTTTAACAGTGGTTGAATTACTTGCAAAGGCTCTTGCCAAGGCTGTTGGTTATACCGAGATAAAGAAAAGATCACTACTCACTTCCATGGAGAACTATGTTACACTACTACTTGAAATTGGGAAACCTATCTTCACTCCATCTTTTGCGTATGGAATCTTGAGGAGATTCTTGCCTGAAGAGAAGGTTGAGGCTGTGAAAGGTCTTACTCTCACTGCAGATGGAAGTGGTGTTGTTTTTGATGTACCAGCTGAAGACTTAGATACATATCTCACTGGTCAGGAAAATGCCTCGGATGTAAATTTAGAGGTGTTGAAAGCATTGCCACGTTTGCAGCAGAGAGATCAATCAAGAGGGGGCAGATTTGGTGATGGTGGTGGTCGAGGTGGATTCGGTGATAGAAATGGGGGGAACAGATTTTCAGGTGGCAGGGGCGGTGGCAGGAATGGTAGATTTTCAAATGATAGGTTTTCCAATGGTGGTGGAAGAGGTCGTGGCAACTGGGGTGGAAAGAGATGGTGA 1920 0.4432 MEEQVQEVKKKEDPNAVSKFRISESLRAKLKEKGIESLFPIQAMTFDTILDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASRKTGYGRPPGVLVLLPTRELACQVHADFEVYGGAMGLTSCCLYGGAPYQSQEIKLKRGVDIVVGTPGRIKDHIERENIDLSQLKFRVLDEADEMLRMGFVEDVELILVETMFSMRPKNMLNLHVYLIELTMLSQYSTDFILGKVENVGKVQTLLFSATLPDWVKHIAAKFLKADKKTADLVGNTKMKASTSVRHIVLPCTSSARSQLIPDIIRCYSSGGRTIIFTETKESASQLAGLLPGARALHGDIQQSQREVTLSGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRRSSISKIERESGVKFEHVSAPQPDDIAKAVGGEAAEMITQVSDSVIPAFKSAAEELLNNSGLTVVELLAKALAKAVGYTEIKKRSLLTSMENYVTLLLEIGKPIFTPSFAYGILRRFLPEEKVEAVKGLTLTADGSGVVFDVPAEDLDTYLTGQENASDVNLEVLKALPRLQQRDQSRGGRFGDGGGRGGFGDRNGGNRFSGGRGGGRNGRFSNDRFSNGGGRGRGNWGGKRW 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi291g00042 639 Gene3D - 501 572 - -
Sebi291g00042 639 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 291 433 IPR001650 -
Sebi291g00042 639 CDD SF2_C_DEAD 277 403 - -
Sebi291g00042 639 Pfam GUCT (NUC152) domain 483 578 IPR012562 GO:0003723|GO:0004386|GO:0005524
Sebi291g00042 639 Pfam DEAD/DEAH box helicase 39 250 IPR011545 GO:0003676|GO:0005524
Sebi291g00042 639 Pfam Helicase conserved C-terminal domain 296 394 IPR001650 -
Sebi291g00042 639 CDD DEADc 26 257 - -
Sebi291g00042 639 SMART ultradead3 34 280 IPR014001 -
Sebi291g00042 639 SMART helicmild6 317 394 IPR001650 -
Sebi291g00042 639 Gene3D - 276 500 IPR027417 -
Sebi291g00042 639 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 94 406 IPR027417 -
Sebi291g00042 639 Gene3D - 1 263 IPR027417 -
Sebi291g00042 639 FunFam DEAD-box ATP-dependent RNA helicase 7 500 572 - -
Sebi291g00042 639 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 172 180 IPR000629 -
Sebi291g00042 639 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 46 262 IPR014001 -
Sebi291g00042 639 MobiDBLite consensus disorder prediction 581 639 - -
Sebi291g00042 639 SUPERFAMILY RNA-binding domain, RBD 487 570 IPR035979 GO:0003676
Sebi291g00042 639 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 2 459 - -
Sebi291g00042 639 CDD GUCT_RH7_like 490 575 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi291g00042 Sebi-Chr291 695299 699500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi291g00042 34 400 Eukaryotic Initiation Factors Gene Family AT1G72730 28.841 1.70e-36 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi291g00042 K16911 - gmx:100820207 921.768