Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi291g00038 ATGGTTCATAGGGAGATTGAGAGGCAAAGGAGGCAAGAAATGGCTTCCCTTCATGCCTCCCTTAGATCCCTTCTCCCTCTTCACTTCATCAAGGGAAAGCGCTCTTTATCTGATCAAATGAATGAGGCAGTGAATTACATAAATCACCTGCACAAGAGTATCAAAGAATTGAGTGACAAGAGGGATGAACTGAAGAAACAACTCTCCAAAAACAAGCAAGCATCTTCTTCTTCTACCTGCAGTTTCACTTTCCACCACAATAATGGAGCTGTGGGAATTGAAATCAACAGTGGCTTCAGAGAGGAAAGGCTCCCACTTTCAAAATTGCTGGAACTAATTCTGTTAGAAGAAGGACTTGAAGTTGTCAGTTGCCTTTCAACTGAAGTCAATGGCAGATTACTCCACACTATCCACTGTGAGGTTAACAATTCCGACAGTGTAGATCTATCTGAGCTGAGAAGGAAATTTTCCAATGTGATTCCATCATTTAGATGTTCTGATTAA 504 0.4127 MVHREIERQRRQEMASLHASLRSLLPLHFIKGKRSLSDQMNEAVNYINHLHKSIKELSDKRDELKKQLSKNKQASSSSTCSFTFHHNNGAVGIEINSGFREERLPLSKLLELILLEEGLEVVSCLSTEVNGRLLHTIHCEVNNSDSVDLSELRRKFSNVIPSFRCSD 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi291g00038 167 Gene3D - 1 79 IPR036638 GO:0046983
Sebi291g00038 167 Pfam Helix-loop-helix DNA-binding domain 3 51 IPR011598 GO:0046983
Sebi291g00038 167 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 50 IPR011598 GO:0046983
Sebi291g00038 167 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 3 158 - -
Sebi291g00038 167 CDD bHLH_AtORG2_like 1 72 - -
Sebi291g00038 167 Coils Coil 47 74 - -
Sebi291g00038 167 FunFam Transcription factor bHLH126 1 78 - -
Sebi291g00038 167 SMART finulus 4 56 IPR011598 GO:0046983
Sebi291g00038 167 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 2 72 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi291g00038 Sebi-Chr291 629203 629955 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi291g00038 3 156 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G25410 45.509 1.51e-37 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi291g00038 HLH 8.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi291g00038 - - gmx:100804315 220.32