Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi291g00012 ATGAGGCCTATTTTCTGTGGAAATTTTGAATATGATGCCCGGCAGTCAGAGCTGGAGCGGCTTTTTAGACGATATGGGAAGGTTGATAGGGTGGATATGAAATCTGGATTTGCTTTCATCTATATGGAAGATGAGAGAGATGCTGATGCTGCAATTCGTGCTCTTGATCGGGTAGAATTTGGTCGGAAGGGACGCAGACTTCGTGTGGAATGGACAAAGCAAGAACGTGGCATCAGAAGGCCTGCTGCTTCAAGAAGATCTACAGCTAATGGGAGACCATCAAAAACATTATTTGTAATTAATTTTGATACATATCATACTAGAACAAGGGATTTGGAGAGGCACTTTGAGCCATATGGTAAGATAGTCAGTGTGAGGATCCGAAGGAACTTTGCTTTTGTTCAATATGAATCGGAGGATGATGCTTGCAGAGCACTGGAAGCTACAAATATGAGCAAGTTAATGGATCGGGTTATTTCAGTTGAATTTGCTGTTAAAGATGATGATGATAGGCGAAATGGATACAGCCCGGAGAGAGGCCATGATCGTCAACGCGATAGAAGCCGCGACGGGAGGCGATCACCCAGTCCTTATCGTAGAGAAAGGGGTAGTCCTGATTATGGCCGTGGACCCAGTCCATATAAGAGGGAGAGGGGCAGCCCTGACTATGGCCGTGGCCGCAGCCGTAGCAGAAGCCCCCATCGGAGAGAGCGAGCTAGCCCTGCATATGGGCGTAGAAGCCCTAGTCCATATGCAAGAGAGAGGAATGGTTCTGACCCTGTTCGTGACTCCAGCCGCAGTCCTTATCACAAAGAGCGAGGGAGAACTGACCGGTCTCACTCCCATAGTCCTGAAGAAAGAGAGAGGACAAGCCCTCAAAATGGTGGTGGCTCTAGCCGTAGTCCTTATGATACTGTAAAAACTAGCCCTGAAAATGGCCATGACTCCAGACATAGTCCTGAAGCAAAAGGAAACCCCAGCCCTTACAATGGTTATGAAGATGGAGGTAGCCCAAATACTATGCCTGAGCCCAGGGATAGTCCCAACTATGGTGGTCCTGAAAGTCCTATGCATGAACGATACCGCAGCCAGTCACCCCCTGCTGAAGAATGA 1113 0.4816 MRPIFCGNFEYDARQSELERLFRRYGKVDRVDMKSGFAFIYMEDERDADAAIRALDRVEFGRKGRRLRVEWTKQERGIRRPAASRRSTANGRPSKTLFVINFDTYHTRTRDLERHFEPYGKIVSVRIRRNFAFVQYESEDDACRALEATNMSKLMDRVISVEFAVKDDDDRRNGYSPERGHDRQRDRSRDGRRSPSPYRRERGSPDYGRGPSPYKRERGSPDYGRGRSRSRSPHRRERASPAYGRRSPSPYARERNGSDPVRDSSRSPYHKERGRTDRSHSHSPEERERTSPQNGGGSSRSPYDTVKTSPENGHDSRHSPEAKGNPSPYNGYEDGGSPNTMPEPRDSPNYGGPESPMHERYRSQSPPAEE 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi291g00012 370 SMART rrm1_1 96 162 IPR000504 GO:0003723
Sebi291g00012 370 SMART rrm1_1 3 70 IPR000504 GO:0003723
Sebi291g00012 370 FunFam Serine/arginine-rich splicing factor RS31 1 85 - -
Sebi291g00012 370 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 96 298 - -
Sebi291g00012 370 Gene3D - 1 86 IPR012677 -
Sebi291g00012 370 Gene3D - 87 176 IPR012677 -
Sebi291g00012 370 MobiDBLite consensus disorder prediction 168 370 - -
Sebi291g00012 370 MobiDBLite consensus disorder prediction 290 309 - -
Sebi291g00012 370 MobiDBLite consensus disorder prediction 168 228 - -
Sebi291g00012 370 SUPERFAMILY RNA-binding domain, RBD 2 170 IPR035979 GO:0003676
Sebi291g00012 370 MobiDBLite consensus disorder prediction 256 289 - -
Sebi291g00012 370 CDD RRM1_AtRSp31_like 2 73 - -
Sebi291g00012 370 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Sebi291g00012 370 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 166 IPR000504 GO:0003723
Sebi291g00012 370 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 159 IPR000504 GO:0003723
Sebi291g00012 370 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 62 IPR000504 GO:0003723
Sebi291g00012 370 FunFam Serine/arginine-rich splicing factor RS31 87 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi291g00012 Sebi-Chr291 272579 275708 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi291g00012 4 161 Eukaryotic Initiation Factors Gene Family AT4G34110 23.699 7.74e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi291g00012 K12893 - gmx:100796509 605.905