Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi291g00003 ATGGAGGGGCATAGTGAGATGGGTCTCATTGGGGATAGTTTAGACAATAGCTTGATGGGGAGAATGAGGGACGATGAGTATGAAAGCCGTTCTGGAAGTGATAACTTTGAAGGCGTATCTGGTGATGATCAGGATGCTGGTGATGATCAACCCCAGAGGAAGAAGAGATACCATAGACACACTCCTCATCAAATTCAAGAGCTTGAGGCTTTCTTCAAGGAGTGTCCTCATCCTGATGAGAAGCAAAGGTTAGATCTTAGTAGGAGGCTTGGCTTGGAGAATAAGCAAGTCAAGTTCTGGTTTCAGAATAGGCGAACCCAAATGAAGACCCAGCTGGAACGCCATGAGAACCTAATGCTTAGGCAGGAAAATGAGAAGCTCAGAGCTGAGAATAGTTTGATGAAGGAAGCCATGTCAAATCCTGTATGTAACAGCTGTGGTGGCCCAGCCATTCCTGGCCAAATTTCATTTGAGGAGCACCAGATTAGAATTGAAAATGCTCGCCTGAAGGATGAATTGAACCGTATATGTGCCTTAGCAAACAAGTTCCTTGGCAAACCAATCTCATCATTGACCGGTCCCATGGCTCTCCCAACCACAAATTCTGGCCTAGAACTTGGTATTGGAAGGAATGGAATTGGTGGTTCAAGCACCCTTGGCACTCCCTTGCCAATGGGGCTTGATTTGGGGGAAGGAGTCTTGGGCACTCAACCTGCAATTCCTGGGATTCGGTCACCAATGGGATTGATGGGAAATGAAGTTCAGATTGAGAGATCAATGCTTATAGATCTTGCATTGGCTGCTATGGAGGAATTACTCAAGATGGCTCAGAATGATAGCCCTCTCTGGATTAAGAGTTTGGATGGCGAGAGAGAAATATTAAACCATGAGGAGTATGCAAGGTTGTTTTCTCCTTGTATTGGTCCAAAACCAGCTGGTTATGTAACTGAAGCTACAAGAGAAACTGGGATAGTGATAATCAACAGTTTAGCCCTTGTGGAAACTTTAATGGATGCGAATCGATGGGCGGAGATGTTTCCCTCTATGATTGCTAGAGCTGTCAACCTTGATGTTATATCTAATGGCATGGGTGGAACCAGAAATGGCGCTTTACAACTGATGCATGCTGAGGTTCAATTGCTTTCACCACTTGTCCCTGTTCGGCAAGTGAGATTCCTCCGGTTCTGTAAGCAGCACGTTGAAGGTGTGTGGGCAGTGGTTGATGTTTCTGTTGAGATGGGTCATGATGCTGCTAATGGACAGCCATTCATGAGCTGTAGGAGGCTTCCTTCAGGCTGTATTGTGCAGGATATGCCCAATGGTTACTCCAAGGTTACTTGGCTTGAGCATTGGGAGTATGATGAGAGTGTTGTCCACCAACTGTATCGCCCATTGCTTAATTGTGCATTGAGCCAAGCTGGTAGGAGAAGCATGTTGAAGCTGGCACAACGCATGACTGGTAACTTCTGCTCTGGTGTTTGTGCTTCCTCAGCTCGCAAGTGGGACATCCTTCAGATGGCAACCCTGAGTGATGACATGAGAGTGATGACCAGGAAAAATGTGGATGACCCTGGCGAACCTCCAGGGATTGTGCTCAGTGCTGCAACTTCTGTTTGGATGCCGGTCTCACGCCAGAGACTGTTTAATTTTCTGCGCGATGAGAGGCTGAGAAGTGAATGGGACATCTTGTCCAATGGTGGACCAATGCAGGAGATGGTCCATATTGCCAAAGGACAAGGACATGGAAATTGCGTTTCTCTCCTTCGTGCTAGTGCTGTGAATGCGAATGATAGCAGCATGCTGATTCTGCAAGAGACATGGATGGATGCATCGTGTTCCGTGGTGGTGTATGCACCGGTTGATGTGCAATCATTGAATGTGGTGATGAGTGGTGGAGATTCTGCATATGTTGCACTCTTGCCTTCAGGATTTGCTATTCTTCCTGACGGTCATTGTGGGCCAAATAACAGTTGCAATGGGACTTTACAAAAAGGCGGTGCTACTGATGGCGGTGGAAGCTTGCTCACAGTTGGTTTTCAAATTCTGGTGAATAGCCTTCCAACGGCTAAGCTCACTGTTGAGTCGGTTGATACTGTGAATAACCTGATCTCATGCACCATTCAGAAGATCAAAGGTGCACTCAGAGTTGCGTAA 2154 0.4666 MEGHSEMGLIGDSLDNSLMGRMRDDEYESRSGSDNFEGVSGDDQDAGDDQPQRKKRYHRHTPHQIQELEAFFKECPHPDEKQRLDLSRRLGLENKQVKFWFQNRRTQMKTQLERHENLMLRQENEKLRAENSLMKEAMSNPVCNSCGGPAIPGQISFEEHQIRIENARLKDELNRICALANKFLGKPISSLTGPMALPTTNSGLELGIGRNGIGGSSTLGTPLPMGLDLGEGVLGTQPAIPGIRSPMGLMGNEVQIERSMLIDLALAAMEELLKMAQNDSPLWIKSLDGEREILNHEEYARLFSPCIGPKPAGYVTEATRETGIVIINSLALVETLMDANRWAEMFPSMIARAVNLDVISNGMGGTRNGALQLMHAEVQLLSPLVPVRQVRFLRFCKQHVEGVWAVVDVSVEMGHDAANGQPFMSCRRLPSGCIVQDMPNGYSKVTWLEHWEYDESVVHQLYRPLLNCALSQAGRRSMLKLAQRMTGNFCSGVCASSARKWDILQMATLSDDMRVMTRKNVDDPGEPPGIVLSAATSVWMPVSRQRLFNFLRDERLRSEWDILSNGGPMQEMVHIAKGQGHGNCVSLLRASAVNANDSSMLILQETWMDASCSVVVYAPVDVQSLNVVMSGGDSAYVALLPSGFAILPDGHCGPNNSCNGTLQKGGATDGGGSLLTVGFQILVNSLPTAKLTVESVDTVNNLISCTIQKIKGALRVA 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi291g00003 717 SUPERFAMILY Bet v1-like 481 711 - -
Sebi291g00003 717 Pfam START domain 264 476 IPR002913 GO:0008289
Sebi291g00003 717 ProSiteProfiles 'Homeobox' domain profile. 51 111 IPR001356 GO:0003677
Sebi291g00003 717 Coils Coil 105 140 - -
Sebi291g00003 717 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 50 469 IPR042160 -
Sebi291g00003 717 MobiDBLite consensus disorder prediction 1 61 - -
Sebi291g00003 717 MobiDBLite consensus disorder prediction 18 32 - -
Sebi291g00003 717 Gene3D - 41 127 - -
Sebi291g00003 717 ProSitePatterns 'Homeobox' domain signature. 86 109 IPR017970 GO:0000981|GO:0006355
Sebi291g00003 717 Pfam Homeodomain 54 109 IPR001356 GO:0003677
Sebi291g00003 717 SUPERFAMILY Homeodomain-like 40 111 IPR009057 -
Sebi291g00003 717 ProSiteProfiles START domain profile. 254 481 IPR002913 GO:0008289
Sebi291g00003 717 SMART HOX_1 52 115 IPR001356 GO:0003677
Sebi291g00003 717 SMART START_1 263 487 IPR002913 GO:0008289
Sebi291g00003 717 SUPERFAMILY Bet v1-like 256 484 - -
Sebi291g00003 717 CDD START_ArGLABRA2_like 258 485 - -
Sebi291g00003 717 FunFam Homeobox-leucine zipper protein HDG1 40 127 - -
Sebi291g00003 717 CDD homeodomain 53 111 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi291g00003 Sebi-Chr291 80405 84676 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi291g00003 1 714 Homeobox Transcription Factor Family AT3G61150 59.001 0.0 866
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Sebi291g00003 START 2.5e-41 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi291g00003 K09338 - gmx:100794400 1300.42