Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi290g00028 ATGGCAAGCCTTCTTCAATTGTTATCTGTGTTGGTGTTCCTTTTGGTCCCAGTTTCATCCCAGGTTGACCAGCTCTTATATGCTGGATTCAAGGATGTGGGTGCCAACAATCTAACCTTGAATGGTGTAGCAGAAATAGAGAAAAATGGAATACTGAGATTGACAAATGAGACAAGCAGATTAATGGGTCATGCTTTTTACCCTTCTCCTTTTCAGCTAAAGAACTCCACCACTGGTAAAGTTCTCTCCTTTTCTTCCTCTTTTGCTCTGGCTATTGTCCCTGAGTATCCCAAGCTAGGTGGCCATGGCTTGGCTTTCACAATAGCAACTACTAAGGATCTCAAAGCTCTCCCTAGTCAGTATCTGGGTCTCCTCAATTCAAGTGATGTTGGTAATTTCTCCAATCATCTCTTTGCTGTTGAGTTTGACACTGTTCAAGACTTTGAGTTTGGTGATATCAATGACAACCATGTTGGAATTGACATCAATAGCTTGCAGTCCAATGCATCTGCAACTGCAGCTTATTACACTGATGATTCAACCAAACAAGATCTCAATATCAAAAGTGGGGAACCTATTCTAGCTTGGGTTGATTATGACTCTGAACAAAATCTTATCAGTGTTACACTTTCTCCCTCTTCAACCAAACCCAAAAAACCAATCTTGTCTTTTCCTATGGATCTCTCACCTATTCTTCATGATACTATGTATGTTGGGTTCTCTGCATCAACTGGTTTGCTTGCTAGCTCTCATTACATCTTGGGTTGGAGCTTTAAAATCAATGGACCAGCACCACCTCTTGATCTATCTTCTCTCCCACAACTTCCACATCCAAAGAAGAAAAACACATCTTTGATAACAGGGGTTTCAGTTACTGTTGTTGTTATTGCATTGTGTTCTGTCTCTATTGGGATTTACCTGTTCAGGAAAATCAAGAACGCTGATGTGATAGAAGCATGGGAGCTTGAAATTGGACCACACAGATACTCCTACCAAGAGCTCAAGAAAGCTACAAAAGGTTTCAAGGACAAAGGGCTACTTGGGCAGGGTGGTTTTGGCAGAGTTTACAAAGGAACATTGCCAAATTCAAAGATTGAAGTAGCTGTTAAGAGAGTTTCACATGAATCTAAACAAGGCCTGAGGGAATTTGTATCAGAAATTGCCAGCATAGGCCGGCTTCGCCACCGGAATTTGGTTCAACTACTAGGGTGGTGCCGCCGCCGGGGTGATCTGCTTCTTGTGTATGATTTCATGGCTAATGGGAGCTTGGACAAGTACTTGTTTGAGGAGCCAGAGATTGTGCTAAGTTGGGAACAGAGGTTCAAGATAATAAAGGGTGTTGCTTCAGCTCTTTTGTATCTACATGAAGGCTATGAGCAGGTGGTAATACATAGGGATGTGAAGGCTAGCAATGTGCTGCTAGATTTGGAACTCAATGGAAGACTTGGTGATTTTGGATTGGCAAGATTGTATGAACATGGTGGTAACCCAAGCACTACAAGAGTAGTGGGAACTTTAGGCTATTTGGCACCAGAGTTGCCAAGAACAGGAAAGGCAACTCCAAGTTCTGATGTTTTTGCTTTTGGTGCACTTTTGATGGAGGTGGCTTGTGGGAGAAGGCCAATTGAGCCTAAGGCATTACCAGAAGAGTTGGTTTTGTTGGATTGGGTGTGGGATAAATACAAAGAAGGAAGAATACTTGATGTGGTGGACCCAAAACTAAATGGCAATTTTGATGAAAAAGAGGTGATTATGGTGTTGAAATTGGGGTTGATATGTTCCAATGATGTTCCCACTGTAAGACCTAGCATGAGGCAAGTAGTGAGGATTTTGGATGGAGAAGTTGAGTTGCCAGATGATTTGAGAAAGCCAGGAGGTATTGATCCACAAGAGGGATTTGATGAATTTTTGCACTCACTTGCATCTTCTTCATTTGATAAGATGAGCTCAAGCTCCTATTTTGGAAATAGAGACTTGGATACTGGTTTTCTTTCTTTTGCTAATTCACCTCATTCTCTTCTCCATGGCAGAGGAGAAACAAGGTGA 2046 0.4194 MASLLQLLSVLVFLLVPVSSQVDQLLYAGFKDVGANNLTLNGVAEIEKNGILRLTNETSRLMGHAFYPSPFQLKNSTTGKVLSFSSSFALAIVPEYPKLGGHGLAFTIATTKDLKALPSQYLGLLNSSDVGNFSNHLFAVEFDTVQDFEFGDINDNHVGIDINSLQSNASATAAYYTDDSTKQDLNIKSGEPILAWVDYDSEQNLISVTLSPSSTKPKKPILSFPMDLSPILHDTMYVGFSASTGLLASSHYILGWSFKINGPAPPLDLSSLPQLPHPKKKNTSLITGVSVTVVVIALCSVSIGIYLFRKIKNADVIEAWELEIGPHRYSYQELKKATKGFKDKGLLGQGGFGRVYKGTLPNSKIEVAVKRVSHESKQGLREFVSEIASIGRLRHRNLVQLLGWCRRRGDLLLVYDFMANGSLDKYLFEEPEIVLSWEQRFKIIKGVASALLYLHEGYEQVVIHRDVKASNVLLDLELNGRLGDFGLARLYEHGGNPSTTRVVGTLGYLAPELPRTGKATPSSDVFAFGALLMEVACGRRPIEPKALPEELVLLDWVWDKYKEGRILDVVDPKLNGNFDEKEVIMVLKLGLICSNDVPTVRPSMRQVVRILDGEVELPDDLRKPGGIDPQEGFDEFLHSLASSSFDKMSSSSYFGNRDLDTGFLSFANSPHSLLHGRGETR 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi290g00028 681 Gene3D - 24 261 - -
Sebi290g00028 681 SUPERFAMILY Concanavalin A-like lectins/glucanases 30 281 IPR013320 -
Sebi290g00028 681 ProSitePatterns Protein kinases ATP-binding region signature. 347 370 IPR017441 GO:0005524
Sebi290g00028 681 Gene3D Transferase(Phosphotransferase) domain 1 418 623 - -
Sebi290g00028 681 PANTHER - 20 624 - -
Sebi290g00028 681 CDD STKc_IRAK 347 613 - -
Sebi290g00028 681 FunFam L-type lectin-domain containing receptor kinase S.4 21 266 - -
Sebi290g00028 681 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672|GO:0006468
Sebi290g00028 681 FunFam L-type lectin-domain containing receptor kinase S.4 418 623 - -
Sebi290g00028 681 Gene3D Phosphorylase Kinase; domain 1 326 417 - -
Sebi290g00028 681 CDD lectin_legume_LecRK_Arcelin_ConA 24 262 IPR001220 GO:0030246
Sebi290g00028 681 FunFam Lectin-domain containing receptor kinase A4.3 326 417 - -
Sebi290g00028 681 Pfam Legume lectin domain 25 272 IPR001220 GO:0030246
Sebi290g00028 681 SMART serkin_6 341 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi290g00028 681 SUPERFAMILY Protein kinase-like (PK-like) 323 616 IPR011009 -
Sebi290g00028 681 Pfam Protein kinase domain 342 543 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi290g00028 681 ProSiteProfiles Protein kinase domain profile. 341 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi290g00028 Sebi-Chr290 961171 963216 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi290g00028 18 654 Receptor kinase-like Gene Family AT3G55550 61.180 0.0 782
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Sebi290g00028 Pkinase 1.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi290g00028 - - gmx:100784346 1144.03