Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi290g00011 ATGTTGAATCATGGTGGAGAAGATGAGCTCTATGAGCAACTATGGAAGGCATGTGCAGGACCCCATGTGGAAATTCCTCGTTCAGGAGAAAGGGTCTTCTATTTTCCTCAGGGACACATGGAACAGTTAGAAGTATCAACAAATCAGGAACTAAATCAGAGGATTCCACTGTTCAAACTTCCCACAAAGATCCTTTGTCGTGTCGTCAACGTCCATTTACTGGCTGAACCAGAAACAGATGAGGTTTATGCACAGATTACTCTAGTGCCGGAATCTAATCAAGCTGAGCCTACAAGCCCTGATTCATGCCCTGCTGAACTTCCAAGGCCAAGAGTTCATTCCTTCTGCAAGGTCTTAACTGCCTCTGATACCAGCACACATGGTGGCTTCTCTGTTCTCAGGAAGCATGCCACAGAATGCCTTCCCTCCTTGGACATGTCCCAATCAACCCCAACTCAAGAATTGGTTGCCAAGGATCTTCATGGTTATGAATGGCGCTTTAAGCATATATTTAGAGGTCAGCCACGTAGACACTTGCTCACAACTGGATGGAGTACTTTTGTGACTTCCAAGAGATTAGTTGCTGGAGATACCTTTGTGTTTCTGAGAGGGAACAATGGAGAATTACGTGTTGGAGTAAGGCGTCTAGCTCCTCTGCAGAACAGCATGCCTTCATCAGTGATTTCCAGTCAGAGCATGCACCTAGGAGTTCTAGCGACTGCATCTCATGCTGTTTCAACTCAGACTCTTTTTGTTGTATATTATAAGCCCAGGACAAGCCAGTTCATTGTAAGTGTGAACAAGTATTTGGAGGCAATCAACCAAAAATTTAGTGTTGGCATGAGGTTCAGGATGAGGTTTGAAGGGGATGATTCTGCTGAGACTGACAAAAGATTTTCGGCCACAATAATTGGAGTAGAAGATATGTCTCCCCACTGGGTGAATTCAACATGGAGATCTCTTAAGGTTCAATGGGATGAGACTGCATCTTTTCCAAGACCTGATAGGGTTTCACCATGGGAGATAGAACCCCTTCTGGCTTCTAATCCTACATCTTCAGTTCCTCCTGTTGTAAACAATAAAAGGCCTCGGCTACCTAGTGAGGTTCCAGATCTTGGGAGGACACAATCAGATGTAACACAACTTAGTGACCATATGTGGCATCATAAGCAGAGTGATCATAATAGTAAAAACAGTTGCAATGGTATAATGAGGAATCAGACAGAAGGAAGTTGGCTATCTTCTCCCCATTCTAGTTGTCCTTCTCATTTATGTCATGACACAACTGATGATAACAAGAGTGTCTCAGTCTCACCTTGGCCTATTTCAAAAACTCACTCAGAAAGATTGAAAAATGATAATTTGCTTGACCATGTTGACAAGGAGAACAAAGTAGAGGCTGCTACAAGCTGTAGATTGTTTGGGATTGAGCTTATTGATCATACCAGGAACTCTCCTGCAGTGGAAAAGGCACCTTTACATGCAGAAAATGCATCCAGAGTCACTTCTGAGGGCTGTGTTAACACCTTGTCCAGAACTGATACAGAACATAAGTATGATATCCCAAAGGCTTCTACAGAAAGGAAACAAGAACAGCAGCAAGTTTCTCCAAAAGAAACTCAAAGCAAGCAAATCTGTAGCAGAAGTTGCACTAAGGTTCAAATGCAGGGTGTTGCAGTGGGTCGTGCTGTGGACTTGACCATGTTGAATGGATATGATCAACTGATAGATGAGTTGGAGAAAATGTTTGACATAAAGGGACAGCTTCAACCAAGGAATAAGTGGGAAATTGTGTTCACTGATGATGAAGGGGACATGATGCTTGTGGGTGATGATCCATGGCCTGAGTTCTGCAATATGGTGAGAAGAATCTTCATTTGTTCCAGTCAGGATGTGCACAAAATGAGCTCAGGGAGCAAACTGCCTATTTCTTCAATAGAAGAGGAGACTGTAATAAGCTCAGACACAGCTGAGACATGA 1980 0.4328 MLNHGGEDELYEQLWKACAGPHVEIPRSGERVFYFPQGHMEQLEVSTNQELNQRIPLFKLPTKILCRVVNVHLLAEPETDEVYAQITLVPESNQAEPTSPDSCPAELPRPRVHSFCKVLTASDTSTHGGFSVLRKHATECLPSLDMSQSTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGNNGELRVGVRRLAPLQNSMPSSVISSQSMHLGVLATASHAVSTQTLFVVYYKPRTSQFIVSVNKYLEAINQKFSVGMRFRMRFEGDDSAETDKRFSATIIGVEDMSPHWVNSTWRSLKVQWDETASFPRPDRVSPWEIEPLLASNPTSSVPPVVNNKRPRLPSEVPDLGRTQSDVTQLSDHMWHHKQSDHNSKNSCNGIMRNQTEGSWLSSPHSSCPSHLCHDTTDDNKSVSVSPWPISKTHSERLKNDNLLDHVDKENKVEAATSCRLFGIELIDHTRNSPAVEKAPLHAENASRVTSEGCVNTLSRTDTEHKYDIPKASTERKQEQQQVSPKETQSKQICSRSCTKVQMQGVAVGRAVDLTMLNGYDQLIDELEKMFDIKGQLQPRNKWEIVFTDDEGDMMLVGDDPWPEFCNMVRRIFICSSQDVHKMSSGSKLPISSIEEETVISSDTAET 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi290g00011 659 FunFam Auxin response factor 543 636 - -
Sebi290g00011 659 FunFam Auxin response factor 113 217 - -
Sebi290g00011 659 MobiDBLite consensus disorder prediction 512 543 - -
Sebi290g00011 659 SMART B3_2 115 217 IPR003340 GO:0003677
Sebi290g00011 659 Gene3D - 544 636 - -
Sebi290g00011 659 FunFam Auxin response factor 276 349 - -
Sebi290g00011 659 Gene3D - 276 349 - -
Sebi290g00011 659 ProSiteProfiles PB1 domain profile. 548 629 IPR000270 GO:0005515
Sebi290g00011 659 SUPERFAMILY CAD & PB1 domains 551 624 - -
Sebi290g00011 659 Gene3D - 112 216 IPR015300 -
Sebi290g00011 659 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 9 636 IPR044835 GO:0003677|GO:0006355|GO:0009725
Sebi290g00011 659 MobiDBLite consensus disorder prediction 350 379 - -
Sebi290g00011 659 Pfam B3 DNA binding domain 115 215 IPR003340 GO:0003677
Sebi290g00011 659 SUPERFAMILY DNA-binding pseudobarrel domain 106 244 IPR015300 -
Sebi290g00011 659 MobiDBLite consensus disorder prediction 512 527 - -
Sebi290g00011 659 MobiDBLite consensus disorder prediction 528 543 - -
Sebi290g00011 659 CDD B3_DNA 113 215 IPR003340 GO:0003677
Sebi290g00011 659 ProSiteProfiles B3 DNA-binding domain profile. 115 217 IPR003340 GO:0003677
Sebi290g00011 659 Pfam Auxin response factor 241 322 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Sebi290g00011 659 Pfam AUX/IAA family 528 632 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi290g00011 Sebi-Chr290 445820 449750 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi290g00011 1 641 B3 DNA Binding Superfamily AT4G23980 60.061 0.0 716
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Sebi290g00011 AUX_IAA 1.1e-13 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi290g00011 K14486 - gmx:100779003 1027.7