Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi290g00006 ATGATTGTTCTTGTAGAGGCACCATCATCTTCTCCATCTTCCAAGAACTCTTGTTCACTTGTTCCTTCTTCTATTTCAATTTCGAACCACAAGGACTTTGTAGTTTCAAGATTTCTAATCTTCATGACAGAGTATCATAACAATCTGCTCGCTTCTTCTACAAGTTCGGGATGGAAGCCAGCGCCAGATTCATTAATTTTTGGGAGTTTTAGATCTCAATCATGGAAAATTTCAGAAGAAGGCAAAGAAACTGCTACAATTGCTCAAGCTCACAAGTTCACAACGCAACCTCTACAAATTCAAACTTCCAGAGCCACAATGAGTTCCTCAGATGCAACAGCCACAACCACCAAAGGTGGAAGGGGAAAAGCCAAGGCTATGAAGTCCGTTTCTAGGTCCTCTAAAGTCGGCCTTCAATTTCCCGTTGGTCGTATTGCTCACTTTCTCATAGTCGGTCACTATGCCCAATGTGTTGGTCCAGGTTCCACTATTTATCTTTCTATCATTTCTGCTTCCTTTTTAATCGATGGAATCCACACGGGAAAGCCAAAGCTAGGAAGTGATTACATGAGTTTTAGCAAGAAAGGAGCAAACCGTTTTGAAAATTTAGATTCATCAAGAAAGATCGATATGGCTTTGTCACTTTTACACTATGCGCGTAAGATGTTTGACGAAATGCCTCAACGGAATGTTATTTCTTGGATTGAATTAATTGTTGCTTATGCCAGGAGTGGTGATATGAATTTTGCTCAAAACTTGTTTGATGAGTTGCCTTTGAAGGATAAAGTGGATTGGACTGCTATGGTTACTGGGTATGCCCAGAATACCATGCCCAAGAAAGCATTAGAGTTTTTCCGACAGTTACAAGATGCAGCCTACAGAGGAGCTAGAACCGTTTTCTGGAGTTCACTGGCCAGTGTGATTTCTTCTTGGATTATCTCACCACTAATGGGAGCAGTTGTGTCAGTCCTTGTCTATAAATGCATTAGGAGGTTTGTATATAGTGCACCAAATCCAGGACAAGCAGCAACAACTGCGGCTCCAATTGTTGTATTTTTGGGTGTAACTGGAATTACTTTTGTTGCCTTTCCTCTTAGTAAGACCTTTCCAGTGGCTCTTTCCCAGGCTTTAGCCAATGGAACTGTCGGTGTTATTCTAGTCGACAAAATCATCAAAAAACAACTTGTTTATGTTCTTCTCAAGCCTACTAGTCCACAACATGAGCCAAAAGAGGAAACACCCCATAAACATATTGGATTCCTCTCTGATGTTGTAGGTCCAAAGGGTACCCAACTGGATATAATTTATGGATTCTTTGGGTACATGCAGGTCCTCTCAGCATGCTTCATGTCATTTGCTCATGGTGGAAATGATGTTGCTAATGCCATAGGTCCTCTGGCTGGTGATGAAGTTACTTTAGTTAGTGAACAACTTTTTCAGGCTTATGATATTGCTGCATTTTGGAACCTCCCTGTCATCTTGGTTTGTAAGGTCAACAATTATGGTATGGGTATTGGTTGA 1521 0.4103 MIVLVEAPSSSPSSKNSCSLVPSSISISNHKDFVVSRFLIFMTEYHNNLLASSTSSGWKPAPDSLIFGSFRSQSWKISEEGKETATIAQAHKFTTQPLQIQTSRATMSSSDATATTTKGGRGKAKAMKSVSRSSKVGLQFPVGRIAHFLIVGHYAQCVGPGSTIYLSIISASFLIDGIHTGKPKLGSDYMSFSKKGANRFENLDSSRKIDMALSLLHYARKMFDEMPQRNVISWIELIVAYARSGDMNFAQNLFDELPLKDKVDWTAMVTGYAQNTMPKKALEFFRQLQDAAYRGARTVFWSSLASVISSWIISPLMGAVVSVLVYKCIRRFVYSAPNPGQAATTAAPIVVFLGVTGITFVAFPLSKTFPVALSQALANGTVGVILVDKIIKKQLVYVLLKPTSPQHEPKEETPHKHIGFLSDVVGPKGTQLDIIYGFFGYMQVLSACFMSFAHGGNDVANAIGPLAGDEVTLVSEQLFQAYDIAAFWNLPVILVCKVNNYGMGIG 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi290g00006 506 Pfam PPR repeat 235 257 IPR002885 -
Sebi290g00006 506 Pfam PPR repeat 265 289 IPR002885 -
Sebi290g00006 506 SUPERFAMILY Histone-fold 113 167 IPR009072 GO:0046982
Sebi290g00006 506 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 261 295 IPR002885 -
Sebi290g00006 506 Gene3D Tetratricopeptide repeat domain 202 310 IPR011990 GO:0005515
Sebi290g00006 506 Pfam Phosphate transporter family 293 468 IPR001204 GO:0005315|GO:0006817|GO:0016020
Sebi290g00006 506 Gene3D Histone, subunit A 79 175 IPR009072 GO:0046982
Sebi290g00006 506 PRINTS Histone H2A signature 157 172 IPR002119 GO:0000786|GO:0003677|GO:0030527
Sebi290g00006 506 PRINTS Histone H2A signature 128 150 IPR002119 GO:0000786|GO:0003677|GO:0030527
Sebi290g00006 506 PANTHER PHOSPHATE TRANSPORTER 292 471 IPR001204 GO:0005315|GO:0006817|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi290g00006 Sebi-Chr290 313006 316798 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi290g00006 293 467 Inorganic Solute Cotransporters AT3G26570 69.714 8.96e-68 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi290g00006 K14640 - gmx:100787472 276.174