Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi290g00003 ATGGCGTCGCTGGGATCTTCATTCTGGTGCTACAGATGCAACCGAATCGTTAGGGTTCCAATCGTCGCTGAGCAAGAGCCCTCGTTACTCTGCCCCGATTGCGCTTCCGGTTTCCTCGAAGAAATCCGAAACCCTACCCACTCCGACCACGGCGGCAGCACAACACACCGCCGGCGAGGCGGAAGCGGCGACCGGTCACCTTTCAACCCGGTTATCGTCCTCCGCGGTGGAAACGACGTCGTCTCGCCAGAGAGCCGGAACTTCGAGCTCTATTACAATGACTCCGGTTCAGGTTCCGGTTCGGGATCCGGTCTTCGTCCGTTGCCAGCTACCGTGACGGAGTTTTTAATGGGCTCGGGCTTCGACCTCTTACTAGACCAGCTGGCCCAAATGGAAGGAACCGCGGTTCGGTTGGACCGGCCTCCGCCACCGGCCGCGTCAAAAGCCGCGATCGAATCGATGCCGGTCGTGAAAATCATCGCCGATCATGTGCGAGCCGAATCTCAGTGCGCCGTTTGTATGGAACCTTTTAAGCTCCATTGCGACGCTCGCGAGATGCCCTGCGGCCACGTGTACCATTCCGATTGCATCGTCCCTTGGCTCTCGTTACGCAACTCGTGCCCGGTGTGCCGCCACGAGCTCCCCTCCGCCACCACCGCCACCGATGACTGTGGCGGTGCCGTGGGGCTCACCATATGGAGGCTCCCCGGAGGAGGATTTGCCGTTGGCAGGTTCGTCGGTGGAAGGGAACTTCCTCTTGTGTACACTGAAATGGATGCTGCATTTAACGGTGTCGGTGGTGGTAATGCTCCTAGGAGGATCTCTTGGGATTCCGCTGTTGTAAGATCGAGGGAGAGAAGAGGAATCGCATTTCGTGGTGCTTTGCGCAATCTCTTTTCGTATTTTCGGAGGGTTAGCAGTTCTTTCTCTCGTTCTTCATCTAGTGATAATTCAGCTATGAATGCAAGGAAGATAAAAATGTCTTCCACAAAGTCACTCAGTGGAACTACTTACACCTTCAGGATGGGGCAATTGCACTACGTAATGATACCAAATAGCATTAAAGGATGTGCTAAGAAACATAGATTACCATTTAAAATAAGATCTCCAGTTCCTTTCGAGTAG 1125 0.5431 MASLGSSFWCYRCNRIVRVPIVAEQEPSLLCPDCASGFLEEIRNPTHSDHGGSTTHRRRGGSGDRSPFNPVIVLRGGNDVVSPESRNFELYYNDSGSGSGSGSGLRPLPATVTEFLMGSGFDLLLDQLAQMEGTAVRLDRPPPPAASKAAIESMPVVKIIADHVRAESQCAVCMEPFKLHCDAREMPCGHVYHSDCIVPWLSLRNSCPVCRHELPSATTATDDCGGAVGLTIWRLPGGGFAVGRFVGGRELPLVYTEMDAAFNGVGGGNAPRRISWDSAVVRSRERRGIAFRGALRNLFSYFRRVSSSFSRSSSSDNSAMNARKIKMSSTKSLSGTTYTFRMGQLHYVMIPNSIKGCAKKHRLPFKIRSPVPFE 374
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sebi290g00003 374 SMART ring_2 170 210 IPR001841 -
Sebi290g00003 374 Pfam Ring finger domain 169 211 IPR001841 -
Sebi290g00003 374 ProSiteProfiles Zinc finger RING-type profile. 170 211 IPR001841 -
Sebi290g00003 374 FunFam E3 ubiquitin-protein ligase RING1-like 132 217 - -
Sebi290g00003 374 MobiDBLite consensus disorder prediction 43 68 - -
Sebi290g00003 374 MobiDBLite consensus disorder prediction 43 63 - -
Sebi290g00003 374 Pfam Protein of unknown function (DUF1117) 228 332 IPR010543 -
Sebi290g00003 374 SUPERFAMILY RING/U-box 150 217 - -
Sebi290g00003 374 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 217 IPR013083 -
Sebi290g00003 374 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 71 215 - -
Sebi290g00003 374 Pfam zinc-ribbon 7 42 IPR039525 GO:0061630
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Sebi290g00003 Sebi-Chr290 147101 148936 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi290g00003 107 216 C3H Transcription Factor Family AT5G01980 44.545 1.31e-24 103
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi290g00003 K11982 - gmx:121172634 382.489