Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi28g00184 ATGGTTCTTTGGTGCCACCGTGTCAGACCCAGTTCAGTTTCTCATTCTTGTGACCCAATGGAGGGTGTTGGTGGTGGTATTAACTTGGTAATGACTGTGATTGGGTTTGCGGTGAGCACCATGTTCATTTTTTTCGTCTGCACCAGACTCATCTGTGCTCGAATTCACTTGAACGCTTCAAGGAGAGCCTTTCGTATTGCTTCCAGATCCAATCTCAGCATGATGGAGCGGGGTAGCCATGGTCTTGAAAGCATAGCTGTCGCCAAATTTCCAACAAAGAAGTTCAGTGACAAATTTTTTGCTTCTGCAGAAAATTCTCAATGCACAGTCTGCCTTTCAGAGTACCAAGATGATGATATGCTGCGTATCCTCCCCTATTGTGGACACTCCTTCCATGTGACATGCATAGACTTATGGCTTCAGCAGAATTCCACTTGTCCTGTTTGTCGAATATCACTGCGTGAATTTCCCGAGAGAAAGCGATTAATGCAACCCCAATTCAGCTCTGCCTTGCAACCTCATAATGGCATGGAGTCCTTTGACACTCAACATTATCACTGTATAATGGTTGATAATGGATTATCATCAAGAACTCCTGAGAATGATCGGGTGAACCCTATACAAGAGAATCATTTTCCATCTGAGGGTGATGGAGCAGTTGCTATGGACAATATCACCTGTTTAAGTCAGGGTGATTTCATTAAAGATGAAGGGAAGAAGCATGTAGAGAGCCCATCAAATTTCTAG 747 0.4378 MVLWCHRVRPSSVSHSCDPMEGVGGGINLVMTVIGFAVSTMFIFFVCTRLICARIHLNASRRAFRIASRSNLSMMERGSHGLESIAVAKFPTKKFSDKFFASAENSQCTVCLSEYQDDDMLRILPYCGHSFHVTCIDLWLQQNSTCPVCRISLREFPERKRLMQPQFSSALQPHNGMESFDTQHYHCIMVDNGLSSRTPENDRVNPIQENHFPSEGDGAVAMDNITCLSQGDFIKDEGKKHVESPSNF 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi28g00184 248 PANTHER OS11G0150450 PROTEIN 24 210 - -
Sebi28g00184 248 SUPERFAMILY RING/U-box 103 156 - -
Sebi28g00184 248 Pfam Ring finger domain 107 150 IPR001841 -
Sebi28g00184 248 SMART ring_2 108 149 IPR001841 -
Sebi28g00184 248 CDD RING-H2_EL5-like 107 150 - -
Sebi28g00184 248 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
Sebi28g00184 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 155 IPR013083 -
Sebi28g00184 248 FunFam E3 ubiquitin-protein ligase ATL6 70 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi28g00184 Sebi-Chr28 2872296 2874044 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi28g00184 34 203 C3H Transcription Factor Family AT4G10150 31.217 9.27e-20 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi28g00184 - - gmx:100786109 409.838