Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi28g00160 ATGGCAATTAGTGGTCGTAAGGGCCATCTGGGAATTGTGGACATGATAAATCTGAGCCTAGTCAGAGAATTTCAGGTAAGAGAAACTGTGCGTGATGTGGTATTCTTGCACAATGAGCTCTTTTTTGCTGCTGCCCAGAAAAAGTATACATACATCTATAATCGTGAAGGCACTGAGCTTCACTGCCTCAAGGAACATGGTCCTGTGTTAAGGCTTCAGTTTCTGAAAAACCATTTTCTCTTGGCTACAATCAACAAATTAGGGCAGCTTCATTATCAGGATGTTACAACGGGTACCGTGGTTGGTCACTCAGGTGGTACAGTTACTATGTGGAAGCCAACCAGTTCTGCCCCTCTTGTCAAGATGCTATGTCATCATGGTCCTGTCTCGACAGTGGCATTTCACTCAAATGGCAACTTAATGGCCACTGCCGGGAAAGATAAAAAGATTAAGCTTTGGGACTTGAGGAAGTTTCAGGTTCTTCAAACATTACCAGGCCTTGCAAATACTTTGGATTTTAGTCAAAAAGGCGTGCTTGCTTGCGGCACTGGTTCATTTATCCAGGTTCTGAGGGATGTTTCTGGTACACAGAACTATTCTAAGTATATGACTCATTCCATGGTGAAGGGTTACCAGATAGGGAAATTAGCTTTTCGACCATATGAAGATGTTCTAGGCATAGGGCATTCAATGGGCTGGTCTAGCATTCTTATTCCAGGATCAGGAGAACCCAACTTTGATTCATGGGTTGCAAACCCATTCGAAACATCTAAACAAAGGAGAGAAAAGGAAATACGGTCTCTTCTGGATAAGCTTCCACCTGAGACAATCATGTTGGATCCCAGCAAGATTGGTACGGTGAAAACAACAAAAAAAGAGAAGCCAACAATGCAAGAGAGGGAAGCTGAGATGGAAGCTGCTGTTGAAGCTGCTAAGGGCAAAAAACTGAAGAAGAAAACAAAAGGAAGAAATAAGCCAGGTAAAATAGCACAGAAAAAGCAAGAGGCAATTGATAGAGTGAAGAGGCCTTACTTGGAGGGGAAAATTCAAGAGGAGGAAAACATATCGAGAAAGAAACAAAAAACCATTGAGGGAGTTGAACTACCAAAATCCTTACAGCGGTTTGCTCGTAAGAAACCATCATCATAA 1149 0.4238 MAISGRKGHLGIVDMINLSLVREFQVRETVRDVVFLHNELFFAAAQKKYTYIYNREGTELHCLKEHGPVLRLQFLKNHFLLATINKLGQLHYQDVTTGTVVGHSGGTVTMWKPTSSAPLVKMLCHHGPVSTVAFHSNGNLMATAGKDKKIKLWDLRKFQVLQTLPGLANTLDFSQKGVLACGTGSFIQVLRDVSGTQNYSKYMTHSMVKGYQIGKLAFRPYEDVLGIGHSMGWSSILIPGSGEPNFDSWVANPFETSKQRREKEIRSLLDKLPPETIMLDPSKIGTVKTTKKEKPTMQEREAEMEAAVEAAKGKKLKKKTKGRNKPGKIAQKKQEAIDRVKRPYLEGKIQEEENISRKKQKTIEGVELPKSLQRFARKKPSS 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi28g00160 382 SUPERFAMILY WD40 repeat-like 2 221 IPR036322 GO:0005515
Sebi28g00160 382 PANTHER WD-REPEAT PROTEIN BING4 101 377 IPR040315 -
Sebi28g00160 382 Gene3D - 1 194 IPR015943 GO:0005515
Sebi28g00160 382 Pfam BING4CT (NUC141) domain 202 280 IPR012952 -
Sebi28g00160 382 Pfam WD domain, G-beta repeat 123 154 IPR001680 GO:0005515
Sebi28g00160 382 SMART BING4CT_2 201 281 IPR012952 -
Sebi28g00160 382 ProSiteProfiles Trp-Asp (WD) repeats profile. 122 163 IPR001680 GO:0005515
Sebi28g00160 382 SMART WD40_4 115 154 IPR001680 GO:0005515
Sebi28g00160 382 SMART WD40_4 17 54 IPR001680 GO:0005515
Sebi28g00160 382 ProSitePatterns Trp-Asp (WD) repeats signature. 141 155 IPR019775 -
Sebi28g00160 382 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 122 156 - -
Sebi28g00160 382 MobiDBLite consensus disorder prediction 310 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi28g00160 Sebi-Chr28 2313758 2316463 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi28g00160 102 194 U-box Gene Family AT2G33340 34.043 5.10e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi28g00160 K14768 - gmx:100802940 632.098