Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi28g00157 ATGGAGAATGATGCAGGGTCGCCGCAGGGTCCGGTTACGTGCGGGTCGTGGATTCGGAGACCCGAGAATCTCAATCTAGTGGTGCTGGGAAGGTCCAGGCGTGGGGATTCTTGTCCCTCTCTGCTCCAGATCCTTTCCTTTGATCCCAAAACCACTTCTTTGTCTACATCCCCTCTGGCCACTTTTGTGTTAGAAGCAGAAGAAGGTGATCCTGTTGCTATTGCAGTGCATCCTAGTGGGGATGATTTTGTGTGCTCTTTGAGCAATGGTAGCTGCAGATTATTTGAGCTGTATGGTCATGAAAAAAACATGAAGCTGTTGGCCAAGGAACTGGCCCCTCTACAGGGGACCAGTCCCCAGAAATGCCTTACTTTTAGTGTTGATGGATCTAAATTTGCTGCTGGTGGGTTGGATGGTCATCTCAGAATTATGGAGTGGCCTAGCATGCGCACAATTTTGGATGAACCAAGAGCACACAAATCTGTCCGGGATATGGATTTTAGTCTAGACTCAGAATTTCTAGCATCAACTTCTACTGATGGTTCGGCAAGAATCTGGAAGATTGAAGATGGTGTTCCTTTGACTACTTTGTCTCGCAACTCGGATGAAAAAATTGAATTATGTCGATTTTCCAAGGATGGGACCAAACCATTTTTATTTTGCGCGGTTCAAAAAGGTGATAAGTCTCTCACTGCAGTTTGGGACATGAGCACATGGAACAAAATTGGGCATAAGAGGTTGATTCGAAAGTCTGCTTCAGTAATGTCTGTTAGCCCTGATGGGAAATACCTTTCCCTGGGCAGTAAAGATGGAGACATATGTGTGGTTGAAATAAAAAAAATGCAGATACACCATTATAGCAAGAGACTACACCTGGGTACAAATATTGCAACACTTGAGTTCTGTCCTAGCGAAAGGGTTGTGCTTACAACATCAGTTGAATGGGGGGCATTGGGAATCTTCAATAATTCTCATCAAAATCGAAGGATGGTTCTCAAGTCTGCCAAGATCAATGATGGCGATGGCATTTCAAAAGCTGTACATTTTGTCATTTTGGTGCATGCACTGGAGAGTGGAGATATCACCATAGAATCTGCTTCTGGTTCTATACCCAGTGCAGAGACAAGTAGCTCCGATATGAAGGAGGAAAAGTCTGAGACATATAGTCATAACATGACAGAAGCAATGGGTGCTGTTTTGACTTATAGGCATGAATTAGGAATGAACTACAACTTCATCCGTCCAGACTTGATTGTGGGATCATGCCTACAGACTCCTGAAGATGTTGATAAGCTTCGTAGAATCGGAGTGAAAACCATATTTTGCCTGCAACAAGATCCAGATCTAGAATATTTTGGAGTTGATATTAATGCCATACGAGAATATGCCAAGACATGCAATGACATTCAACACTTGCGTGCTGAGATAAGGGACTTTGATGCATTTGATTTACGGATGCGTCTCCCAGCTGTAGTTAGCAAATTATACAAGGCAATAAATTCCAATGGAGGCGTGACATATATACATTGCACTGCTGGACTTGGAAGAGCTCCAGCTGTTGCGTTGACTTATATGTTTTGGGTTCTGGGTTATGAACTTAATGAGGCTCATACACTACTTCAGAGTAAAAGGTCGTGCTTTCCAAAACTTGATGCCATAAAAAGTGCAACCGCTGATATTCTTACAGGCCTCAGTAAGAAGCCTATCACTTTGTCATGGGGAGACAGCAATTGCTCTACAGTGGAAGTTTCAGGACTTGATATTGGATGGGGGCAGAGAATACCCCTAGATTTTGATGACAAACGGGGTTTGTGGTTTCTCAAGAGGGAATTGCCTGAAGGACACTATGAGTACAAGTACATTGTTGATGGGGAATGGATATGCAATAAGGATGAGCTTGTAACATCTCCCAACAAAGATGGCCATGTCAATAATTTTCTTGATGTCCTTGATGATACAAATGGTGTTCGAGCCTCCATTCAGGAGAGATTGACTGGTGATGATTCTGATCTTACAAAGGATGAAAGACTCAGAATAAAAGAGTTTCTTGAAGCTTGTCCTGATGAGGATCTTTGA 2076 0.4302 MENDAGSPQGPVTCGSWIRRPENLNLVVLGRSRRGDSCPSLLQILSFDPKTTSLSTSPLATFVLEAEEGDPVAIAVHPSGDDFVCSLSNGSCRLFELYGHEKNMKLLAKELAPLQGTSPQKCLTFSVDGSKFAAGGLDGHLRIMEWPSMRTILDEPRAHKSVRDMDFSLDSEFLASTSTDGSARIWKIEDGVPLTTLSRNSDEKIELCRFSKDGTKPFLFCAVQKGDKSLTAVWDMSTWNKIGHKRLIRKSASVMSVSPDGKYLSLGSKDGDICVVEIKKMQIHHYSKRLHLGTNIATLEFCPSERVVLTTSVEWGALGIFNNSHQNRRMVLKSAKINDGDGISKAVHFVILVHALESGDITIESASGSIPSAETSSSDMKEEKSETYSHNMTEAMGAVLTYRHELGMNYNFIRPDLIVGSCLQTPEDVDKLRRIGVKTIFCLQQDPDLEYFGVDINAIREYAKTCNDIQHLRAEIRDFDAFDLRMRLPAVVSKLYKAINSNGGVTYIHCTAGLGRAPAVALTYMFWVLGYELNEAHTLLQSKRSCFPKLDAIKSATADILTGLSKKPITLSWGDSNCSTVEVSGLDIGWGQRIPLDFDDKRGLWFLKRELPEGHYEYKYIVDGEWICNKDELVTSPNKDGHVNNFLDVLDDTNGVRASIQERLTGDDSDLTKDERLRIKEFLEACPDEDL 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi28g00157 691 Pfam WD domain, G-beta repeat 154 187 IPR001680 GO:0005515
Sebi28g00157 691 SMART dsp_5 409 559 IPR020422 GO:0006470|GO:0008138
Sebi28g00157 691 Gene3D Protein tyrosine phosphatase superfamily 402 682 IPR029021 -
Sebi28g00157 691 Gene3D Immunoglobulins 564 654 IPR013783 -
Sebi28g00157 691 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 486 544 IPR000387 GO:0016311|GO:0016791
Sebi28g00157 691 ProSiteProfiles Dual specificity protein phosphatase domain profile. 409 566 IPR020422 GO:0006470|GO:0008138
Sebi28g00157 691 Pfam Glycogen recognition site of AMP-activated protein kinase 568 651 IPR032640 -
Sebi28g00157 691 CDD DSP_laforin-like 408 555 IPR045204 GO:0019203
Sebi28g00157 691 Pfam Dual specificity phosphatase, catalytic domain 452 547 IPR000340 GO:0008138|GO:0016311
Sebi28g00157 691 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 361 689 - -
Sebi28g00157 691 Gene3D - 9 334 IPR015943 GO:0005515
Sebi28g00157 691 FunFam SEC12-like protein 1 12 323 - -
Sebi28g00157 691 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 406 551 IPR029021 -
Sebi28g00157 691 SUPERFAMILY E set domains 567 650 IPR014756 -
Sebi28g00157 691 CDD E_set_AMPKbeta_like_N 568 649 - -
Sebi28g00157 691 FunFam Phosphoglucan phosphatase DSP4, chloroplastic 564 654 - -
Sebi28g00157 691 ProSiteProfiles Trp-Asp (WD) repeats profile. 162 196 IPR001680 GO:0005515
Sebi28g00157 691 SUPERFAMILY WD40 repeat-like 67 313 IPR036322 GO:0005515
Sebi28g00157 691 FunFam Phosphoglucan phosphatase DSP4, chloroplastic 402 581 - -
Sebi28g00157 691 SMART WD40_4 238 277 IPR001680 GO:0005515
Sebi28g00157 691 SMART WD40_4 107 145 IPR001680 GO:0005515
Sebi28g00157 691 SMART WD40_4 55 96 IPR001680 GO:0005515
Sebi28g00157 691 SMART WD40_4 149 187 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi28g00157 Sebi-Chr28 2275968 2293144 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi28g00157 408 691 Protein tyrosine phosphatase (PTP) family AT3G52180 69.366 3.17e-147 428
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi28g00157 - - gmx:100804010 620.157