Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi28g00139 ATGATTCTCCCCTTTTCAATGGCATTGAGACCTTCATCTTTCGTGATCTTGCTGGCATATGGTGCGCTGCTAGTTGTGGCCTCATTGACACCATGCTGGGATGATGCCAATTTTGGTTCTACCTTGAAGATTCAGGATACTGAATATTTAATTCACTGCCACCCCATTGATATAATGGGAATTGAATCGGTGTATGTTTTGGCTGTACCACAAAATGGATTTGTCAACTTTGATCTAAATTATTATAAGAAAAAGGCATTGGCATTTTTTATTGTCATGATGGTCATGATATTTATTGCAATATTCAGCTTTCTATTAATAAATGCAAAGCCACAAGGCGAGAAATGCATTTGTGTGCCTCACCTCATCAAACAGATGGAAGCCACCCAACAATCTGAGCGAAAGAATCTGAACAAGAGCCTTGCTTTTGCTAGTGCCAGCCATGATCTTCGTACTTCTCTTGCAGGCCTCACTGGACTACTGAACTCTATACTTGACACAAGCAAATTGAGTCGGAAAATGCAACTTGAGGAAGAAGAATTTGAATGTGTCCCATCTCCTGGAGGTGTAGTTGATTTCCTACCATCCAGAGGCCAACTGAAGAAAGGGCACATAACAGTTCGGGCATGGGCTCAGAAGCCAACTTTACAGAGCTCAATAATCAAGACTAACCAGTATAGTTTCATGAAATGTTTATCATGCTTACTTTATAAGAAAAATGAAACACATGATGATCTAGAAAAAGCCATGAATTCAATCCAGCAAGACCCAAATTGTACGGATTTTATATTTGAAGTGGATGATACAGGAAAAGGAATTCCCAAAGAGAATTACAAGTCTGTGTTTGAGAATTATGTTCAAGTCAAAGAAACTGCTCTTGGACAAGGAGGAACCGGCTTGGGACTTGGGATTGTGCAGTCTTTGGTGCGTTTGATGCATGGAGATATTGGAATTGTGGACAAGGATATTGGCAAAAAAGGAACATGCTTCAGGTTCAATGTGCTCCTCACATTATGTGAGAGTGAGACAGTGACAGAATGTAGCACAAGGGAATGTCTTGAGTATGGATCAGGTGATGACAGGAACCAAACTCGGGGGAGAATTAACATTCACACTACTAGTTCTGGTTCAAGCATTTGTTCCATGAGTCCAAGGTTACATATTTGCAGCTCTAGTCCTAGACCTGAGGCTTCCCATGTTGTTCTTTTGATTGGAAACAAGGAGAGGAGAAGGATTTCTCAAAGGTTCATGGAGAGCTTAGGGATTAAAGTTAAAGCTGTGAAGTCTTGGAAACATCTCTTTTATACTCTTGAGAAGTTCAGACTGAAGGGTCACTATTCTGGTAGCCAGAGTTCTCCAGAGTCTTCCAATTTGAGTTCTCAAAATTATTCTTTTGCTAAAGTCAGAGTTCCTTTGAGTGCTATGGATGGAAATGGAATTGAGTATATACCACCTTCAGTGTTAAAGAAGACAGATATTGGAGCTGCCCCAGGTTTCATCCTGATTATCATTGATGTAAATGAAGAAACATTTTCTGAACTTCATAGGATTGTATCCAAATTCAAGAAAAGCCTTGCCAACCCTTGTAAGGTTGTTTGGTTGGATAAGTCACTTATGCTTAGTGTAAACTCAGAAACAGTTGATCAAGATGACATAGTCATATCTAAACCTTTTCATGGTAGTCAATTGTTCCAAGTTATAAAGCTTCTTCCTGAGTATGGTGGTACTTGGCAAACAAGTTCTAGTAAAGCTATGAGAGGAATTTCTCATGATAGAGCAAGAAAGAGTAGTAGTAGTAGGGATTCAAGCTTATCAAAATACCAGTCCCCTAAGATGATATTGGACAGATCACAAGTATCCCCAAGTGATGAAACCCCATGTGGAGGAGACTCAAGCTGTCACAAACCCTTAAGAGGCAAGAAATTTTGGTTGTTGAGGATCTCATCCAAATTTTAG 1956 0.3972 MILPFSMALRPSSFVILLAYGALLVVASLTPCWDDANFGSTLKIQDTEYLIHCHPIDIMGIESVYVLAVPQNGFVNFDLNYYKKKALAFFIVMMVMIFIAIFSFLLINAKPQGEKCICVPHLIKQMEATQQSERKNLNKSLAFASASHDLRTSLAGLTGLLNSILDTSKLSRKMQLEEEEFECVPSPGGVVDFLPSRGQLKKGHITVRAWAQKPTLQSSIIKTNQYSFMKCLSCLLYKKNETHDDLEKAMNSIQQDPNCTDFIFEVDDTGKGIPKENYKSVFENYVQVKETALGQGGTGLGLGIVQSLVRLMHGDIGIVDKDIGKKGTCFRFNVLLTLCESETVTECSTRECLEYGSGDDRNQTRGRINIHTTSSGSSICSMSPRLHICSSSPRPEASHVVLLIGNKERRRISQRFMESLGIKVKAVKSWKHLFYTLEKFRLKGHYSGSQSSPESSNLSSQNYSFAKVRVPLSAMDGNGIEYIPPSVLKKTDIGAAPGFILIIIDVNEETFSELHRIVSKFKKSLANPCKVVWLDKSLMLSVNSETVDQDDIVISKPFHGSQLFQVIKLLPEYGGTWQTSSSKAMRGISHDRARKSSSSRDSSLSKYQSPKMILDRSQVSPSDETPCGGDSSCHKPLRGKKFWLLRISSKF 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi28g00139 651 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 252 336 IPR003594 -
Sebi28g00139 651 PRINTS Bacterial sensor protein C-terminal signature 262 276 IPR004358 GO:0016310|GO:0016772
Sebi28g00139 651 PRINTS Bacterial sensor protein C-terminal signature 280 290 IPR004358 GO:0016310|GO:0016772
Sebi28g00139 651 PRINTS Bacterial sensor protein C-terminal signature 296 314 IPR004358 GO:0016310|GO:0016772
Sebi28g00139 651 Gene3D - 192 342 IPR036890 -
Sebi28g00139 651 SMART HKATPase_4 189 338 IPR003594 -
Sebi28g00139 651 PANTHER TWO-COMPONENT HISTIDINE KINASE 104 168 - -
Sebi28g00139 651 ProSiteProfiles Histidine kinase domain profile. 264 338 IPR005467 -
Sebi28g00139 651 MobiDBLite consensus disorder prediction 600 627 - -
Sebi28g00139 651 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 255 354 IPR036890 -
Sebi28g00139 651 MobiDBLite consensus disorder prediction 579 636 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi28g00139 Sebi-Chr28 2027173 2031696 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi28g00139 39 576 Histidine Kinase Gene Family AT2G47430 38.424 7.40e-107 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi28g00139 - - lja:Lj2g3v2925240.1 684.1