Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi28g00130 ATGTCAGGAGAGGAAATTTGGTCATCAGCTGAAGAAGAATCTAGTGAATCTCTGCCTCCATTTGATAACAGGAATGGCTACAATTCAAGAACAGGCATTTATCACTCTCTTGTTAGGCTTGGAACCAAGCATGAAATCCCAACAAAGCCTGATCTTAACACTGCCAGTCTTGTGCTATCACAGTTCCCACATGCAGACCTTGCTGAGGCAAAAATTGCATTCATTGATTCAAGTACTAATCAGATAGTAAGCTATGGTGAGCTTCGCAGGTCTATTTACTCCCTTGCATCAGCTTTGTTCCATGGACTTGAGATTAGGAAAGGGGATGTTGTGTTTGTATTGTCCCCAAACTCAATCTTATACTCAACCATATGCATAGCTGTGTTATCAGTAGGAGCAATTCTAACCACTGCCAATCCACTCAATACTGAGTCAGAAATTGCCAAACAAGTGTGTGATTCAGGTGCTAAACTAGCCATCTCAGCACCAGAGGAGCTACACAAATTAGTCCCAACTGGGGTGCCTACAATTCTCACCTCTCGTCCATCTGATGGGAATTTGTTGTCAGTTGAAGAGTTAATAGAAGGCTGCTATAATTCACAAGAGTTGCCACATGTTCCTGTGGCACAATCAGACACTGCTGCTATACTTTACTCTTCAGGGACTACTGGGAAATTTGACTTCCAAGCTATGCTTGTTGCTATTCACAAGCACAAAGTTAACAACTTACCAGCAGTTCCACCAGTGATCCATGCATTGGTAAAATATGCAAGCAAAACTGGGTTTGACTTGTCCAGTCTAAGAAAGGTGGGGTCAGGGGCTGCACCTTTGAGTAAGGAAGTGGCACAGGAGTTTAGAAAGAAGTTTCCTTGGGTTGAACTAAGGCAAGGTTATGGACTAACAGAGAGTTGTGGCGCAGCAACATTTTTTGTGTCAGATAAAGATGCTAAAGCTCATCCAGACTCATGTGGGAAGCTGATTCCAACATTTTGTGCAAAAGTGGTAGACATTGAAACAGGAAATCCTTTGCCTCCTCACAAGGAAGGAGAGTTATGGCTGAAAAGTCCTACTATTATGAAAGGATATCTAGGAAATTTTGAGGCAACAACTGCAACAATTGATCCAGAAGGTTGGTTGAGGACAGGTGATCTTGGTTATATTGATGACAATGGATTTGTTCATGTAGTTGAACGGATAAAGGAGCTAATCAAGCATAAAGGGTATCAGGTGGCTCCGGCAGAATTGGAATCTCTACTGCTAAGTCATCCCCATATTGTTGATGCAGCAGTTATACCGGTTGAAGATGAAGAAACTGGACAAATACCAATGGCATATGTGGTGAGAGCAGCTGGCTCTGAACTCTCAGAAGACCAAGTCATTCAATTTGTTGCTGACCAGGTGGCTCCATATAAGAAAGTGAGAAGGGTGAGTTTCATTGACACTATTCCAAGGTCAGCTGCTGGCAAGATATTGCGGAAGGATCTTGTTTCTAGAACCAAATATCAACTTGTCTCCAAGTTATGA 1524 0.4245 MSGEEIWSSAEEESSESLPPFDNRNGYNSRTGIYHSLVRLGTKHEIPTKPDLNTASLVLSQFPHADLAEAKIAFIDSSTNQIVSYGELRRSIYSLASALFHGLEIRKGDVVFVLSPNSILYSTICIAVLSVGAILTTANPLNTESEIAKQVCDSGAKLAISAPEELHKLVPTGVPTILTSRPSDGNLLSVEELIEGCYNSQELPHVPVAQSDTAAILYSSGTTGKFDFQAMLVAIHKHKVNNLPAVPPVIHALVKYASKTGFDLSSLRKVGSGAAPLSKEVAQEFRKKFPWVELRQGYGLTESCGAATFFVSDKDAKAHPDSCGKLIPTFCAKVVDIETGNPLPPHKEGELWLKSPTIMKGYLGNFEATTATIDPEGWLRTGDLGYIDDNGFVHVVERIKELIKHKGYQVAPAELESLLLSHPHIVDAAVIPVEDEETGQIPMAYVVRAAGSELSEDQVIQFVADQVAPYKKVRRVSFIDTIPRSAAGKILRKDLVSRTKYQLVSKL 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi28g00130 507 CDD 4CL 46 495 - -
Sebi28g00130 507 Pfam AMP-binding enzyme C-terminal domain 414 489 IPR025110 -
Sebi28g00130 507 Gene3D - 399 503 IPR045851 -
Sebi28g00130 507 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 225 496 - -
Sebi28g00130 507 Pfam AMP-binding enzyme 229 404 IPR000873 -
Sebi28g00130 507 Pfam AMP-binding enzyme 70 225 IPR000873 -
Sebi28g00130 507 SUPERFAMILY Acetyl-CoA synthetase-like 64 498 - -
Sebi28g00130 507 Gene3D - 85 224 - -
Sebi28g00130 507 Gene3D - 225 319 - -
Sebi28g00130 507 Gene3D Luciferase; Domain 3 320 398 - -
Sebi28g00130 507 MobiDBLite consensus disorder prediction 1 24 - -
Sebi28g00130 507 FunFam 4-coumarate--CoA ligase 2 401 502 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi28g00130 Sebi-Chr28 1890364 1892651 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi28g00130 22 495 Monolignol Biosynthesis Gene Families AT5G63380 40.364 5.35e-119 359
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi28g00130 K10526 - gmx:100783104 693.73