Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi28g00128 ATGGCACTCCGCACTATCGCTCCTGGCTTCCGATTCCACCCCACCGATGAAGAGCTCGTTGGCTTCTACCTGAAACGCAAGGTCACTGGAAGACCCTTCCACATCGACCCGATCGCCGTCATCGAAATCTACAAATTCGAGCCCTGGGACCTTCCTTGTCGGTCGAAGCTGAAGACCAGAGACCTAGAATGGTACTTCTTCACGGCGCTGGACAAGAAATACGGCAACGGTTCCAGGACCAACCGTGCCACCGAGAGAGGCTACTGGAAGACTACCGGCAAGGATCGCACCATCAAGAACGGCGAACGCACCGTCGGAATGAAGAAAACCCTCGTTTACCACATAGGTCGAGCTCCACACGGCGATCGCACTAATTGGGTCATGCATGAATATAGGATGGTCGATGAGCAATTGGCCCAGGCTGGAGTATTGCAGGATGCTTATGTGCTGTGTAGGATATTCGAGAAGAGTGGTCAAGGACCCAAGAACGGGGAGAAGTATGGGGCCCCTTTCATAGAAGAGGAATGGGATGATGATGCTGTGGTAGATGCCGTGCCTGTGCCCGTTCAGTCCGTGCCGGCTGTTGATGATGAGGATTTGAAGGAGGTGTCTACTATTGGTGCTTATATTGAAAATAAGGACCTTGACAAGAACCTTGATGATGCAAATGTTACAATTGGAACTGCTGGTTTTTCATCAAACTTCCATTATGGAGAGTGTAGTGGCCATCCTCAGCATTCTGATCAGAAGCCATTGGTGGACACTTTTGGAATTTATGGGCCTCAAAATGACCAGCCTTTTAATATGGCTGAGCAATATGATATGGACACCAATGCAGTGAAAGATGGAGACACTGTTGAGCTGAACCATGATGGAAATTCTCTGAATCTCAGTTATCCTTTTGATGATCTGGATGTGTACTTTGATGCCACTGGTTATCCTCTGAGTTTTGATGATGGATCATTCCTGGAAACCAATGATCTTGTGAATCTGGGTGAGGGTAATCCTACTGAGGCAGATCCTTCTGGTACTGATATGCTAGATGAGTATCTTGCATGCAGTGATGACGATATTCTCAAGTATATATCTTTTGATTCTCCTCAGAATACAGAGAGTCAAAGCCCTGTTATTGACCAAGGACCTGCTTCTGTTGAGAAGAGTGTGGAGGGAGATATTACCCTGGCGAGCAAACATGTTTCTGATGAAGCACAATCCAGCAATGAAGCTTCTTCAAAACATAATCCACAGGCATCCAAGATGGTATCAGGAGAGACAAATCCATTTGTAAAGCAGGCCAATAAATTGTTGGCCAGCATACCTGCTCCACCAGCATTTGCTTCAGAGTTTCCTTCTAAGGAGTTTGCTCTTGGGCTTCATCCTGCTGCTCAGTCTTCCAATTCAGCTCATGTAACTGCAGGTATGATCAGCATAACAGACATTACTTTAAGAGGCGATGCGATGGATTGGATGGTGGGCAAGAATGGAGGGTTTAATAATCCCCTTATGTCTACTCGGTTTTCTCAACCTGGTGTTAACTCTGCTGCTTTGATGCCTATTTGTGGCTTGGTCTCTAGCAAGACTGCATTTGTGTTGTCGCATGGCTGGATTTTCTTGATGAGTTTTTCGGTTCTGATTCTCTCATTGAGTTTCAAGATTGGATGCATCATGTATAGTGGTAAATGA 1683 0.4629 MALRTIAPGFRFHPTDEELVGFYLKRKVTGRPFHIDPIAVIEIYKFEPWDLPCRSKLKTRDLEWYFFTALDKKYGNGSRTNRATERGYWKTTGKDRTIKNGERTVGMKKTLVYHIGRAPHGDRTNWVMHEYRMVDEQLAQAGVLQDAYVLCRIFEKSGQGPKNGEKYGAPFIEEEWDDDAVVDAVPVPVQSVPAVDDEDLKEVSTIGAYIENKDLDKNLDDANVTIGTAGFSSNFHYGECSGHPQHSDQKPLVDTFGIYGPQNDQPFNMAEQYDMDTNAVKDGDTVELNHDGNSLNLSYPFDDLDVYFDATGYPLSFDDGSFLETNDLVNLGEGNPTEADPSGTDMLDEYLACSDDDILKYISFDSPQNTESQSPVIDQGPASVEKSVEGDITLASKHVSDEAQSSNEASSKHNPQASKMVSGETNPFVKQANKLLASIPAPPAFASEFPSKEFALGLHPAAQSSNSAHVTAGMISITDITLRGDAMDWMVGKNGGFNNPLMSTRFSQPGVNSAALMPICGLVSSKTAFVLSHGWIFLMSFSVLILSLSFKIGCIMYSGK 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi28g00128 560 SUPERFAMILY NAC domain 5 156 IPR036093 GO:0003677|GO:0006355
Sebi28g00128 560 Pfam No apical meristem (NAM) protein 8 133 IPR003441 GO:0003677|GO:0006355
Sebi28g00128 560 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 277 - -
Sebi28g00128 560 MobiDBLite consensus disorder prediction 366 386 - -
Sebi28g00128 560 MobiDBLite consensus disorder prediction 399 422 - -
Sebi28g00128 560 MobiDBLite consensus disorder prediction 366 380 - -
Sebi28g00128 560 FunFam Nac domain-containing protein 86 15 159 - -
Sebi28g00128 560 Gene3D NAC domain 15 160 IPR036093 GO:0003677|GO:0006355
Sebi28g00128 560 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi28g00128 Sebi-Chr28 1856668 1859234 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi28g00128 2 552 NAC Transcription Factor Family AT5G04410 40.066 7.29e-124 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sebi28g00128 NAM 1.3e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi28g00128 - - aprc:113871167 682.945