Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi28g00117 ATGGAGGGAGTGAGAGCTGCTGAGGAGGGAAAGGGAACAACAATACATGCTTTAGAGTATAGTATGCAAATGGAATATGAATGTAGCCCTCCTAGCTGGGAATTCTACTGCCAGGAAGAGGGGTTAGAGGACTTGAGGCATTCTCTTCTTTACACAACCTTGGAGCTAGAGGCAACAATTGTGTCAGCTAAGGAAGAGATTACCAAAAGAGAATGTGAATTGATCCATGCCAATGAGCTATTAAGCAGGAGTGAAGATGAGCTACAAGGTGGCTTCTCTGAAAAGCATTCTGTACCAGCTGCTTCTTCTGATTGTGAAGAAAACAGCATGCCTTCTCCTGATAGCAATTCAAACCCACATCCAGCAGCACTGCAAGCAGTGCTTGAATTAGCAGAAAAGAAACCATTGCCAGAGAAAGGGAAGCTCTTGAAGGCAGTGGTAGAAGCAGGACCTCTGCTGCAGACCCTTCTCTTGGCTGGACCACTCCCACAGTGGCAGCATCCACCTCCACAACTCAATTCAATTGAGATTCCTCCAGTGGCAATTTCATCTCCAACTCCTTCCCTACTATCTCAAGACTCTAAGTCTAACAAAAGCCTCTCTTTCAGCAAGAAAAGGGATCTTGTCCCCTCTTCAGCTACTGACTGTCCTGTTTCAAAGTGTAGAAAGGAAGACATGCAAGGTGGTGCGAATCACACTCACCTTGGAGACCCCTGCCTTGTTCTGACTTCTGATCCCAAACCTCGCCTTCGTTGGACTGCTGACCTTCACGAACGGTTTGTTGATGCTGTCACTCAACTTGGGGGTGCCAGTAAAGCCACACCAAAAGCGATTATGAGGACCATGAATGTCAAGGGTTTGACACTCTATCATTTAAAGAGCCATCTTCAGAAGTACAGGCTTGGTAAACAATCAGGAAAAGAATCCGATGAGGGAGGCAAAGATGAAAGCCCTGGTACTGATAACTCATCTCCAAAGTTACCAGCTTCTGATGCAAATGAGGGTCATGAAGTCAAGGAGGCATTAAGAGCACAAATGGAAGTGCAAAGTAAACTACATTTACTAGTGGAGGCAGAGAAGCACTTGCAAATTCGCCAGGACGCAGAGCGGAGATATATGGCCATGCTTGAGAGAGCATGTAAGATGTTGGCTGATCAATTTATTGGCGATACAATTATAGACACAGACAGCCAAAAATTCCAAGGACTGGAAAGTAAAGCATCTAGAAGTTCCTTAGTGGATCCCTTTGGCTTTTGCTCCATACCGAGCACTGAGGTAGGCGGAATACATGTTTCAGAAGTACCACAGATGCTCCAACCTCAAGGGGCTGGCTGTTCGACTGAAAGTTGCCTAACATCACTGGAGAGTCTCGGAGGGTTGACACTAGAAGGATCTCCAGGTGGGACAAAGAAGAGGATGCTGAGCTTGGACTCAATGGTAACACCTTTGATGTGGAGTGAAACCAACATGAGAACTCAAGGCATCCAATTAGCCCAAATCAATCCTCAAGGAATTACTAGGTATGGCATGTAG 1533 0.4599 MEGVRAAEEGKGTTIHALEYSMQMEYECSPPSWEFYCQEEGLEDLRHSLLYTTLELEATIVSAKEEITKRECELIHANELLSRSEDELQGGFSEKHSVPAASSDCEENSMPSPDSNSNPHPAALQAVLELAEKKPLPEKGKLLKAVVEAGPLLQTLLLAGPLPQWQHPPPQLNSIEIPPVAISSPTPSLLSQDSKSNKSLSFSKKRDLVPSSATDCPVSKCRKEDMQGGANHTHLGDPCLVLTSDPKPRLRWTADLHERFVDAVTQLGGASKATPKAIMRTMNVKGLTLYHLKSHLQKYRLGKQSGKESDEGGKDESPGTDNSSPKLPASDANEGHEVKEALRAQMEVQSKLHLLVEAEKHLQIRQDAERRYMAMLERACKMLADQFIGDTIIDTDSQKFQGLESKASRSSLVDPFGFCSIPSTEVGGIHVSEVPQMLQPQGAGCSTESCLTSLESLGGLTLEGSPGGTKKRMLSLDSMVTPLMWSETNMRTQGIQLAQINPQGITRYGM 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi28g00117 510 Pfam Protein of unknown function (DUF1635) 84 218 IPR012862 -
Sebi28g00117 510 Pfam Protein of unknown function (DUF1635) 41 87 IPR012862 -
Sebi28g00117 510 FunFam Myb family transcription factor 246 304 - -
Sebi28g00117 510 Gene3D - 246 304 - -
Sebi28g00117 510 MobiDBLite consensus disorder prediction 186 217 - -
Sebi28g00117 510 Pfam Myb-like DNA-binding domain 250 300 IPR001005 -
Sebi28g00117 510 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 244 304 IPR017930 -
Sebi28g00117 510 MobiDBLite consensus disorder prediction 186 208 - -
Sebi28g00117 510 Pfam MYB-CC type transfactor, LHEQLE motif 337 382 IPR025756 -
Sebi28g00117 510 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 224 456 IPR044848 GO:0003700
Sebi28g00117 510 MobiDBLite consensus disorder prediction 300 336 - -
Sebi28g00117 510 NCBIfam myb-like DNA-binding domain, SHAQKYF class 247 302 IPR006447 GO:0003677
Sebi28g00117 510 MobiDBLite consensus disorder prediction 102 121 - -
Sebi28g00117 510 SUPERFAMILY Homeodomain-like 247 303 IPR009057 -
Sebi28g00117 510 MobiDBLite consensus disorder prediction 301 317 - -
Sebi28g00117 510 MobiDBLite consensus disorder prediction 86 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi28g00117 Sebi-Chr28 1662020 1676207 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi28g00117 225 454 G2-like Transcription Factor Family AT3G24120 46.185 5.39e-60 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Sebi28g00117 DUF1635 2.1e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi28g00117 - - gmx:100779871 476.863