Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi28g00113 ATGGGGTATCTCTTGTTGCTTTCATGCTTTTCTACCTTGTTATATGCTGCTTCTGCCTTGAGTTCTGATGGGTTGACACTGTTGTCACTCTTAAGGCACTGGACTGTTGTTCCTAGTGACATAAACTCTACCTGGAAGGCCTCTGATTCCACTCCATGCTCATGGGCAGGAGTGGGTTGTGATCTTGCCTACAATGTAATATCTCTAGAGCTCAGCAACTATTCGATTTCTGGTCAATTAGCACCTGAAATTGGAGATTTGATTCACTTGCAAACCTTAAACTTGTCACATAATGATCTCTCAGGAAAAATTCCACCACAATTAAGCAATTGTAGCATACTTGAGTCCTTGAAGCTTTATGCAAACAACTTTAGTGGAGGAATACCTGAGAGCTTCAAGGACTTGCAAAATCTGAACTACATGGACCTTTCTTCTAATCTACTGATTGGTGAAATTCCTGAATCCTTGTTTGAAATTCCTCTCCTGAAAGTATTGTTTCTTAACAATAATGGTTTAAGTGGTGCCATTCCTGCAAGTATTGGGAACAGCACTAAACTTGTCTCACTGGATCTTCAGAGTAATCAATTGTCTGGGACAATTCCCATTTCCATTGGAAACTGTAGTGAATTAAGCCATCTGTATTTGGACTCAAATAAATTGCAGGGAGTTATTCCTGAGAGTCTAAACAATCTAAAAAATCTTCAAGTATTAAGCCTCAATAGAAATGAGCTTGGAGGTACCATCAAGTTGGGATCTGGAAATTGCAAGAAGTTATCTTATGTGAGTCTTTCTTACAATGAATTTAGTGGGGGCATTCCACCATCTTTGGGGAATTGCAGTGGTCTAACTGAGTTTTATGCTGCAGTGAATAACTTAGTTGGCAGTATACCATCAACCTTGGGTCTGCTGCACAAGCTTTCTAATCTAATGATTCCAGTGAACCATTTTTCTGGGAAAATACCTCCACAGATTGGTAATTGCAAGTCATTGGATCAGTTACATTTGTATTCCAACGCACTTGAGGGAGAAATTCCTAGTGAATTGGGAAACTTGACTAAATTACGTGATCTTAGATTGTATGATAACCATCTGATAGGGGAAATTCCACTTAGCATATGGAAAATCCAAAGCCTTGAGCATGTCCTTGTGTACAATAACAGCCTTTCAGGAGAGCTACCTTTAGAGATGACAGAGCTCAAACATCTCATTTTGGACTTTATGTTTAATAAGTTCAATGGTACCCTCCCACCAAATCTTTGTTTTGGAAAGCAATTAGTCAAGCTGAATATGGGTGGCAATCAATTTCATGGTAGCATACCTTCTGATGTAGGAAGATGTACAACTCTTACAAGGGTAAGACTTGAAGACAATAATTTTACTGGTCCTCTTCCTGATTTTGAAACCAATCCAAATGTCATGTACATGAGTGTCAGCAACAATAAAATCAGTGGAGCAATTCCATCAAGTTTGGGAAACTGCACAAATCTCTCCTTTTTAAATTTGTCCATGAACAGCTTTACAGGTATTGTACCCTCAGAGCTAGGAAACCTTGTGAATCTCCAGACTTTGGATCTCTCTCACAATAAATTGGAAGGTCCTTTGCCACATCAGCTGTCAAACTGTACCAAAATGCACAGAAAAACTAAGCAGGAAGCAATAATCACTGAGAAAGATGATTCTTCAGCTCTTCTCAGTAAAGTGATGGAAGCTACAGAAAACCTAAATGATAAATATATCATTGGCAGAGGAGCTCAAGGAGTTGTTTATAAAGCTGTAATAGGCCCAGACAAAATTTTGGCTGTCAAGAAGCTTGTATTTGCTCAGAATGAAGGGAAAAACTTAAGCATGACCACAGAAATTCAAACCCTTGGAAAGATTAGGCATAGAAATTTGGTCAAATTGGAAAACTGCTGGTTGAGAGAAAACTATGGTCTAATCTCATACAGATACATGCCAAATGGAAGCCTTTATGATGCTTTGCATGAGAGGAATCCACCACAATCCATAGAATGGAATGTCCGCAATAAGATAGCTATTGGAATTGCTCATGGATTGGCTTATCTTCATTATGATTGTGATCCTGTCATAGTGCACCGAGACATCAAAACAAACAACATACTTCTAGATTCTGAAATGGAGCCTCATATTTCAGATTTTGGTGTTGCTAAGCTTTTGGATCAGGCTTCTACCTCAACACAGTCAATATTTGTTACTGGTACAATTGGTTATATTTCACCAGAGAATGCTTATACAAGAGCTAAGGGTAAGGAGTCTGATGTATACAGTTATGGGGTAGTTTTGCTGGAGCTGATATCCAGAAAGAAGCCATTAGATCCATTATTTATGGAAGGAGCAGATATAGTTAATTGGGAAACAAGTAACCAAGGTGCTTTTGGTGGCATTGAGATGTACAGAAAGGGATCCACACACAGAAAAATGCATGCTTTTAGGTTGGCAATTGAGCACCATGGAGATCAAGAATCTCTGGATTTTTGGGAGGGTTTGCCACAAGAAATGAAGAACTTGGCTCGTGAGTTGTACCAAACACAGTGTAGAATGAATGAGACCATTGTAGTATGCCACAGTGAACCCGGTGCTTGGTATCCTCCATTGTTTCAAACCTTTCCATGCCCACCATCTTTTTACCATGATTTCAAGTCTGTGATTGGCAGGACTATGTTTGAGACTGATAGAGTGAATGGTGAACATGTAGAGCACTGTAATAGAATGGATTATGTTTGGGTTCCTACAGAGTTTCACAAATCTACATTTATAGAAAGTGGGGTTGATCCTTCCAAGGTGGTGAAGATTGTTCAACCTATTGATGTGAAGTTCTTTGATCCTGTCAAGTACAAGCCATTGGATCTTGCTTCTAGAGCAAAACTGGTTTTAGGTTCTGGCGTGAGGAAAAGTTTTGTATTTTTAAGTATCTTCAAGTGGGAGTATAGGAAAGGGTGGGATGTGTTGTTAAAATCATACTTGAAAGAATTCTCAAAAGATGATAGGGTTGCTTTATACTTGTTAACAAATCCATATGATACTGACAGGGATTTTGGGAACAAAATATTGGATTTTGTGGAGAATTCTGATGTAGTAGAACCAGTTAGTGGTTGGGCTCCTGTCTATGTTATTGATACCCACATAGCACAAAGTGACTTGCCAAGAGTTTACAAGGCAGCTGATGCTTTTGTTCTTCCTTCCAGAGGAGAAGGATGGGGGAGACCTCTGGTGGAAGCCATGTCAATGTCATTGCCAGTGATTGCTATAAATTGGTCTGGACCAACTGAATATTTGACTGAGGATAATAGCTATCCATTATTTGTGGATAGAATGAGTGAAGTAATGGAAGGTCCATTCAGGGGACATCTTTGGGCTGAACCTTCTGATTATAAACTTCAGATTCTTATGAGGCAGGTGAAGGATAATCACACTGAGGCTACAGCTAAAGGCAGAAAAGCAAGGGAGGACATGATAAGACGGTTCTCACCTGGGATTGTGGCAGGCATTGTTACAGATCACATACAAAACATACTAGGGGGGTAA 3543 0.3943 MGYLLLLSCFSTLLYAASALSSDGLTLLSLLRHWTVVPSDINSTWKASDSTPCSWAGVGCDLAYNVISLELSNYSISGQLAPEIGDLIHLQTLNLSHNDLSGKIPPQLSNCSILESLKLYANNFSGGIPESFKDLQNLNYMDLSSNLLIGEIPESLFEIPLLKVLFLNNNGLSGAIPASIGNSTKLVSLDLQSNQLSGTIPISIGNCSELSHLYLDSNKLQGVIPESLNNLKNLQVLSLNRNELGGTIKLGSGNCKKLSYVSLSYNEFSGGIPPSLGNCSGLTEFYAAVNNLVGSIPSTLGLLHKLSNLMIPVNHFSGKIPPQIGNCKSLDQLHLYSNALEGEIPSELGNLTKLRDLRLYDNHLIGEIPLSIWKIQSLEHVLVYNNSLSGELPLEMTELKHLILDFMFNKFNGTLPPNLCFGKQLVKLNMGGNQFHGSIPSDVGRCTTLTRVRLEDNNFTGPLPDFETNPNVMYMSVSNNKISGAIPSSLGNCTNLSFLNLSMNSFTGIVPSELGNLVNLQTLDLSHNKLEGPLPHQLSNCTKMHRKTKQEAIITEKDDSSALLSKVMEATENLNDKYIIGRGAQGVVYKAVIGPDKILAVKKLVFAQNEGKNLSMTTEIQTLGKIRHRNLVKLENCWLRENYGLISYRYMPNGSLYDALHERNPPQSIEWNVRNKIAIGIAHGLAYLHYDCDPVIVHRDIKTNNILLDSEMEPHISDFGVAKLLDQASTSTQSIFVTGTIGYISPENAYTRAKGKESDVYSYGVVLLELISRKKPLDPLFMEGADIVNWETSNQGAFGGIEMYRKGSTHRKMHAFRLAIEHHGDQESLDFWEGLPQEMKNLARELYQTQCRMNETIVVCHSEPGAWYPPLFQTFPCPPSFYHDFKSVIGRTMFETDRVNGEHVEHCNRMDYVWVPTEFHKSTFIESGVDPSKVVKIVQPIDVKFFDPVKYKPLDLASRAKLVLGSGVRKSFVFLSIFKWEYRKGWDVLLKSYLKEFSKDDRVALYLLTNPYDTDRDFGNKILDFVENSDVVEPVSGWAPVYVIDTHIAQSDLPRVYKAADAFVLPSRGEGWGRPLVEAMSMSLPVIAINWSGPTEYLTEDNSYPLFVDRMSEVMEGPFRGHLWAEPSDYKLQILMRQVKDNHTEATAKGRKAREDMIRRFSPGIVAGIVTDHIQNILGG 1180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi28g00113 1180 ProSitePatterns Serine/Threonine protein kinases active-site signature. 696 708 IPR008271 GO:0004672|GO:0006468
Sebi28g00113 1180 Gene3D Phosphorylase Kinase; domain 1 546 650 - -
Sebi28g00113 1180 SUPERFAMILY L domain-like 32 197 - -
Sebi28g00113 1180 Gene3D Glycogen Phosphorylase B; 958 1178 - -
Sebi28g00113 1180 PRINTS Leucine-rich repeat signature 517 530 - -
Sebi28g00113 1180 PRINTS Leucine-rich repeat signature 186 199 - -
Sebi28g00113 1180 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 19 178 - -
Sebi28g00113 1180 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 306 548 - -
Sebi28g00113 1180 SUPERFAMILY RNI-like 162 561 - -
Sebi28g00113 1180 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 538 650 - -
Sebi28g00113 1180 Pfam Glycosyl transferases group 1 1048 1102 IPR001296 GO:0016757
Sebi28g00113 1180 Gene3D Ribonuclease Inhibitor 21 301 IPR032675 -
Sebi28g00113 1180 Pfam Leucine rich repeat N-terminal domain 21 61 IPR013210 -
Sebi28g00113 1180 Pfam Leucine Rich Repeat 89 111 IPR001611 GO:0005515
Sebi28g00113 1180 SMART LRR_typ_2 231 255 IPR003591 -
Sebi28g00113 1180 SMART LRR_typ_2 351 375 IPR003591 -
Sebi28g00113 1180 SMART LRR_typ_2 184 207 IPR003591 -
Sebi28g00113 1180 SMART LRR_typ_2 135 159 IPR003591 -
Sebi28g00113 1180 SMART LRR_typ_2 208 230 IPR003591 -
Sebi28g00113 1180 SMART LRR_typ_2 517 541 IPR003591 -
Sebi28g00113 1180 SMART LRR_typ_2 87 111 IPR003591 -
Sebi28g00113 1180 ProSiteProfiles Leucine-rich repeat profile. 89 112 IPR001611 GO:0005515
Sebi28g00113 1180 Pfam Protein kinase domain 577 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi28g00113 1180 Gene3D Ribonuclease Inhibitor 302 545 IPR032675 -
Sebi28g00113 1180 SMART LRR_sd22_2 517 543 - -
Sebi28g00113 1180 SMART LRR_sd22_2 183 209 - -
Sebi28g00113 1180 SMART LRR_sd22_2 135 154 - -
Sebi28g00113 1180 SMART LRR_sd22_2 351 380 - -
Sebi28g00113 1180 SMART LRR_sd22_2 231 263 - -
Sebi28g00113 1180 SUPERFAMILY Protein kinase-like (PK-like) 563 780 IPR011009 -
Sebi28g00113 1180 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 835 1179 - -
Sebi28g00113 1180 ProSiteProfiles Protein kinase domain profile. 574 872 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi28g00113 1180 Gene3D Transferase(Phosphotransferase) domain 1 651 851 - -
Sebi28g00113 1180 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 254 544 - -
Sebi28g00113 1180 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 179 305 - -
Sebi28g00113 1180 FunFam Os07g0541700 protein 651 740 - -
Sebi28g00113 1180 Pfam Leucine rich repeat 470 530 IPR001611 GO:0005515
Sebi28g00113 1180 Pfam Leucine rich repeat 185 244 IPR001611 GO:0005515
Sebi28g00113 1180 Pfam Leucine rich repeat 114 172 IPR001611 GO:0005515
Sebi28g00113 1180 SMART serkin_6 574 913 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi28g00113 Sebi-Chr28 1570982 1575894 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi28g00113 816 1178 Glycosyltransferase AT3G10630 69.421 0.0 548
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Sebi28g00113 Pkinase 2.6e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi28g00113 - - gmx:100817655 797.349