Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi28g00109 ATGGGGTATCTCTTGTTGCTTTCATGCTTTTCTACCTTGTTATATGCTGCTTCTGCCTTGAGTTCTGATGGGTTGACACTGTTGTCACTCTTAAGGCACTGGACTGTTGTTCCTAGTGACATAAACTCTACCTGGAAGGCCTCTGATTCCACTCCATGCTCATGGGCAGGAGTGGGTTGTGATCTTGCCTACAATGTAATATCTCTAGAGCTCAGCAACTATTCGATTTCTGGTCAATTAGCACCTGAAATTGGAGATTTGATTCACTTGCAAACCTTAAACTTGTCACATAATGATCTCTCAGGAAAAATTCCACCACAATTAAGCAATTGTAGCATACTTGAGTCCTTGAAGCTTTATGCAAACAACTTTAGTGGAGGAATACCTGAGAGCTTCAAGGACTTGCAAAATCTGAACTACATGGACCTTTCTTCTAATCTACTGATTGGTGAAATTCCTGAATCCTTGTTTGAAATTCCTCTCCTGAAAGTATTGTTTCTTAACAATAATGGTTTAAGTGGTGCCATTCCTGCAAGTATTGGGAACAGCACTAAACTTGTCTCACTGGATCTTCAGAGTAATCAATTGTCTGGGACAATTCCCATTTCCATTGGAAACTGTAGTGAATTAAGCCATCTGTATTTGGACTCAAATAAATTGCAGGGAGTTATTCCTGAGAGTCTAAACAATCTAAAAAATCTTCAAGTATTAAGCCTCAATAGAAATGAGCTTGGAGGTACCATCAAGTTGGGATCTGGAAATTGCAAGAAGTTATCTTATGTGAGTCTTTCTTACAATGAATTTAGTGGGGGCATTCCACCATCTTTGGGGAATTGCAGTGGTCTAACTGAGTTTTATGCTGCAGTGAATAACTTAGTTGGCAGTATACCATCAACCTTGGGTCTGCTGCACAAGCTTTCTAATCTAATGATTCCAGTGAACCATTTTTCTGGGAAAATACCTCCACAGATTGGTAATTGCAAGTCATTGGATCAGTTACATTTGTATTCCAACGCACTTGAGGGAGAAATTCCTAGTGAATTGGGAAACTTGACTAAATTAAGTGATCTTAGATTGTATGAAAACCATCTGATAGGGGAAATTCCACTTAGCATATGGAAAATCCAAAGCCTTGAGCATGTCCTTGGTATTGTACCCTCAGAGCTAGGAAACCTTGTGAATCTCCAGACTTTGGATCTCTCTCTCAATAAATTGGAAGGTCCTTTGCCACATCAGCTGTCAAACTGTACCAAAATGAACAGGTTTGATGTGGGATTCAATTTCCTGAATGGCACATTTCCATCAAGTTTGCAGAGCTGGACTACATTAACCACTTTAATTCTCAGAGAGAATCATTTTAGTGGGGGTATCCCAGCTTTCTTGTCGGAATTTCAAGCGCTTATTGAACTACAGCTTGGTGAGCTTCCTGAGGAGATTGGAAACCTGAAGAGTTTGCTAAAACTGGATCTATCTTGGAACAATTTGACAGGAAGCATACAAGTTCTTCATGAGCTCAGTTCATTATCTGAACTCAACATTTCATACAATTCTTTTGAAGGTCCTGTACCACAACAGCTGATGACATTACCAAATTCTTTATCATTTTTGGGGCAATCCTGTCCTATGTGTCAGTTTTTCATTGTCACATACATGCCAAATGGAAGCCTTTATGATGCTTTGCATGAGATGAATCCACCACAATCCATAGAATGGAATGTCCGCAATAAGATAGCTATTGGAATTGCTCATGGATTGGCTTATCTTCATTATTACTGTGATCCTGTCATAGTGCACCGAGACATCAAAACAAGCAACATACTTCTAGATTCTGAAATGGAGCCTCATATTTCAGATTTTGGTGTTGCTAAGCTTTTGGATCAGGCTTCTACCTCAACACAGTCAATATTTGTTACTGGTACAATTGGTTATATTTCACCAGAGAATGCTTATACAAGAGCTAAGGGTAAGGAGTCTGATGTATACAGTTATGGGGTAGTTTTGCTGGAGCTGATATCCAGAAAGAAGCCATTAGATCCATCATTTATGGAAGGAACAGATATTGTTAATTGGGTTAGTTCTGTCTGGGAGGAGAACAGGAGCTATTGA 2106 0.3936 MGYLLLLSCFSTLLYAASALSSDGLTLLSLLRHWTVVPSDINSTWKASDSTPCSWAGVGCDLAYNVISLELSNYSISGQLAPEIGDLIHLQTLNLSHNDLSGKIPPQLSNCSILESLKLYANNFSGGIPESFKDLQNLNYMDLSSNLLIGEIPESLFEIPLLKVLFLNNNGLSGAIPASIGNSTKLVSLDLQSNQLSGTIPISIGNCSELSHLYLDSNKLQGVIPESLNNLKNLQVLSLNRNELGGTIKLGSGNCKKLSYVSLSYNEFSGGIPPSLGNCSGLTEFYAAVNNLVGSIPSTLGLLHKLSNLMIPVNHFSGKIPPQIGNCKSLDQLHLYSNALEGEIPSELGNLTKLSDLRLYENHLIGEIPLSIWKIQSLEHVLGIVPSELGNLVNLQTLDLSLNKLEGPLPHQLSNCTKMNRFDVGFNFLNGTFPSSLQSWTTLTTLILRENHFSGGIPAFLSEFQALIELQLGELPEEIGNLKSLLKLDLSWNNLTGSIQVLHELSSLSELNISYNSFEGPVPQQLMTLPNSLSFLGQSCPMCQFFIVTYMPNGSLYDALHEMNPPQSIEWNVRNKIAIGIAHGLAYLHYYCDPVIVHRDIKTSNILLDSEMEPHISDFGVAKLLDQASTSTQSIFVTGTIGYISPENAYTRAKGKESDVYSYGVVLLELISRKKPLDPSFMEGTDIVNWVSSVWEENRSY 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi28g00109 701 Gene3D Ribonuclease Inhibitor 21 179 IPR032675 -
Sebi28g00109 701 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 386 474 - -
Sebi28g00109 701 ProSiteProfiles Leucine-rich repeat profile. 484 506 IPR001611 GO:0005515
Sebi28g00109 701 Pfam Leucine rich repeat 114 172 IPR001611 GO:0005515
Sebi28g00109 701 Pfam Leucine rich repeat 185 244 IPR001611 GO:0005515
Sebi28g00109 701 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 19 178 - -
Sebi28g00109 701 SMART LRR_typ_2 231 255 IPR003591 -
Sebi28g00109 701 SMART LRR_typ_2 392 416 IPR003591 -
Sebi28g00109 701 SMART LRR_typ_2 482 509 IPR003591 -
Sebi28g00109 701 SMART LRR_typ_2 184 207 IPR003591 -
Sebi28g00109 701 SMART LRR_typ_2 135 159 IPR003591 -
Sebi28g00109 701 SMART LRR_typ_2 208 230 IPR003591 -
Sebi28g00109 701 SMART LRR_typ_2 87 111 IPR003591 -
Sebi28g00109 701 Gene3D Ribonuclease Inhibitor 473 534 IPR032675 -
Sebi28g00109 701 Gene3D Ribonuclease Inhibitor 180 252 IPR032675 -
Sebi28g00109 701 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 179 308 - -
Sebi28g00109 701 Pfam Leucine rich repeat N-terminal domain 21 61 IPR013210 -
Sebi28g00109 701 ProSiteProfiles Protein kinase domain profile. 422 701 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi28g00109 701 SUPERFAMILY L domain-like 92 530 - -
Sebi28g00109 701 Pfam Protein kinase domain 546 678 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi28g00109 701 ProSiteProfiles Leucine-rich repeat profile. 89 112 IPR001611 GO:0005515
Sebi28g00109 701 FunFam Os07g0541700 protein 551 640 - -
Sebi28g00109 701 PRINTS Leucine-rich repeat signature 392 405 - -
Sebi28g00109 701 PRINTS Leucine-rich repeat signature 186 199 - -
Sebi28g00109 701 SUPERFAMILY Protein kinase-like (PK-like) 543 680 IPR011009 -
Sebi28g00109 701 Gene3D Ribonuclease Inhibitor 253 380 IPR032675 -
Sebi28g00109 701 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 65 249 - -
Sebi28g00109 701 ProSitePatterns Serine/Threonine protein kinases active-site signature. 596 608 IPR008271 GO:0004672|GO:0006468
Sebi28g00109 701 Gene3D Transferase(Phosphotransferase) domain 1 551 701 - -
Sebi28g00109 701 Gene3D Ribonuclease Inhibitor 381 472 IPR032675 -
Sebi28g00109 701 Pfam Leucine Rich Repeat 89 111 IPR001611 GO:0005515
Sebi28g00109 701 SMART serkin_6 473 701 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi28g00109 Sebi-Chr28 1540277 1543491 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi28g00109 545 694 Receptor kinase-like Gene Family AT1G73080 59.603 1.09e-54 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Sebi28g00109 Pkinase 1.7e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi28g00109 - - gmx:100802056 592.808