Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi28g00105 ATGAACAATAGTAGCAACTCGGAACCGAGCCATGGTGGGAGTGGTGGTTTTGACACTAGTGGGTTCACATATGGCCTAGCATTTATAATTGGCCTTGTCTTCGTAGTTGTCACTATAGCTGTTGCCTGTATACGCCTTCACATGTCTCGCACTCCTAATATACTCCATATTGTGGCTGGTTTTCCACCTCCTCAACACTCAATTGAGGTCATGGAACAAGGCCACAGTAGTGACACCAGTTTTGAAGGCTACCCGAAACTGCTATACTCAGAAGTAGTAGAGAATAAAGGTGGTTCAAGCATTAGCATTTCTTCTAGCTGCTCCATCTGCTTAGGGGACTATAAAGAAAGTGACATGTTGAGGTTACTTCCTGATTGTGGCCATCTCTACCACCTCGCTTGTGTTGATCCATGGCTCAGGTTACATTCCACTTGTCCTATATGTCGAAAATCATCTCTTCAACCTCCACACTCTACCTCCAATTAG 486 0.4465 MNNSSNSEPSHGGSGGFDTSGFTYGLAFIIGLVFVVVTIAVACIRLHMSRTPNILHIVAGFPPPQHSIEVMEQGHSSDTSFEGYPKLLYSEVVENKGGSSISISSSCSICLGDYKESDMLRLLPDCGHLYHLACVDPWLRLHSTCPICRKSSLQPPHSTSN 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi28g00105 161 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Sebi28g00105 161 Pfam Ring finger domain 106 149 IPR001841 -
Sebi28g00105 161 SUPERFAMILY RING/U-box 89 155 - -
Sebi28g00105 161 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 153 IPR013083 -
Sebi28g00105 161 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 13 159 IPR045899 -
Sebi28g00105 161 SMART ring_2 107 148 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi28g00105 Sebi-Chr28 1515453 1515938 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi28g00105 21 159 C3H Transcription Factor Family AT5G06490 38.750 1.30e-29 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi28g00105 - - gmx:102663718 197.208