Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi28g00103 ATGAGTTACACATCTAAACAGTTGAGCCAGAGCAGCAGGGTTCTTGCAAACAAGCCAATGAAGGAGGTTACTGTGCAAGGAGAATTCTTCAAAATTGAAGGAAACACAACTTTCGTGATGAACTATGCACGTTGGTCAGAAGAACATTACAAGCTCGTTTCTGAGATAAAGAGTGCTTTAAATGATCATGATCATATTATTCACGATGACAGGTTACAGATACTTGTAAACATAATTATGAAGCACTACTCTGAACTCTTCCAGATGAAAACAAGTGCTGCTGCAAATGTAGATGCCTTCAATGTTGGTTCTGCTATTTGGTGCAGAACAGCTGAACCCCATTTTTGGTGGATTGGAGGCTTTCGCCCTTCTGAACTTCTTCAGGTTATTCTGCCTCAACTTCAACATTTGTGCACCCAGCAACAACTTTCTGATATTTTTAATTTGGGACAATCATGTCAACAAGCAGAAGAAGCTCTTGCACAAGGCATGGAAAAACTCCAGCAGATCCTTGATAAAGCGACAGCAGCAGGTGACAAAAGATTTCAACTGGCGTATGTCCCTCAACAAATGAGCTTCTTAAAGCAGCCAAATCCAATGGTGGTGAAGATGATGAGATGGCCTCCATGGCCACCTCTCTCTTCCAAGAAATTTGAAGCAGTTGTCATTGTCCAGAGGCTTCAAGGCTCAAGTTTATTGCAACCTGAGGAGGAGGTGAGGTCCTTGGTGGTTGAAATCAAGTGGAAAGGTCAGAAAGGTGTGGCCTTGAGCTCATTGAGGCGCTCCATGAAGAGAAATTTCACCACAGAAGTGGCTGTTAGGGATGCAGGGTTAGTTGAATGGAACCAGGAGTTTAGAAATGTGTGCACCTTCACTGGGTACAAGGAAAACATGTTTTATCCATGGGAAGTTATGTTCACACTTTCCAATGTATCTAACCAAGGGCCCAAAACAAGGGCCTCTGTAGCTGGAGTTACATCAATAAATTTGGCAGAATATGTGCCTGCAGCTGTGGATAAAGAGACTGAAATTGTTGTTCCTTTGAATGTCCCTGGTCTGAGAAGAGTAAAAATCTTTACTGATTATGTATCAACTGGAAGAGCAAAGAAGGCAAGCTCCAAAGATGAAGGAAGTGATTGCAGGAGCTCCAATAGAAGTGAAGATTCTGAATACAGATATACATCTGACACAGATTCACTAGATAATAATGATGCTGCAATTAAATCAGAGGAAAATGAGGAGGATTCATGTGTGAGACATTCATTGAGTTATGAGACACTGGCCTCTGGAAACTGTGTAGGAGGATCACCTTATACAAGTTCAACTTTTAATGGCAGTTGGGAGCACAAGGAAGTCATTAGCCGAGATGGAAAGATGAAACTCCATACCCAAATCTTTTTTGCTTCAATTGATCAAAGGAGCGAACGCGCTGCTGGGGAGAGTGCATGTGCAGTTCTTGTTGCTTTCATTGCTGATTGGTTAAGAATGAACCAAGTTGAGATGCCAATCAAGTGTGAATTTGATAGCCTCATTAAAGATGGATCATCAGAATGGAGAATTCTTTGTGAGAACAAGGACTATATGAAGAAGTTTCCAGATAAACACTTTGATCTTGATACTGTTTTGCAAGCCAAAATCCGTCCAGTATCTGTAGTCCCAGAAAAGTCCTTTGTTGGATTTTTTATTCCAGAAGAATTTGAGGGTGGAGATTTTGAATTCCTTCATGGTGCAATGTCCTTTGATAACATATGGGAAGAAATAAGCCATTCTGCATCAGAATTGCACATGGTTAGTGAGCCTTTGGTGTACATAGTAAGTTGGAATGACCATTTTTTTGTCCTGAAGGTTGAGCAAGATGCTTACTACATCATTGACACTTTGGGAGAGAGACTGCATGAAGGATGCAATCAAGCCTATATCCTTAAGTTTGATACAAGCACAAAAATAGAGAAACTGCATAATGAAAATCAAACATTGGAGCCAAAATCTGTGAGTGTTGCAGTGCAGATAAATGGTTCAGAAGAAAATGTAGTTGATGGGGCTTTTATAGTCACCCCAAATGATAGAAGGGAGGAGATTATATGTAGAGGCAAGGAGTCATGCAAAGAGTACATTAAGAGCTTCTTAGCTGCAATCCCTGTAAGAGAATTGCAGGGTGATGTCAAGAAAGGCTTGAAAGCATCCATGCCATTTCATCATCGGTTACAAATTGAATTCCACTACACCAAGCTCAAGTAA 2238 0.4084 MSYTSKQLSQSSRVLANKPMKEVTVQGEFFKIEGNTTFVMNYARWSEEHYKLVSEIKSALNDHDHIIHDDRLQILVNIIMKHYSELFQMKTSAAANVDAFNVGSAIWCRTAEPHFWWIGGFRPSELLQVILPQLQHLCTQQQLSDIFNLGQSCQQAEEALAQGMEKLQQILDKATAAGDKRFQLAYVPQQMSFLKQPNPMVVKMMRWPPWPPLSSKKFEAVVIVQRLQGSSLLQPEEEVRSLVVEIKWKGQKGVALSSLRRSMKRNFTTEVAVRDAGLVEWNQEFRNVCTFTGYKENMFYPWEVMFTLSNVSNQGPKTRASVAGVTSINLAEYVPAAVDKETEIVVPLNVPGLRRVKIFTDYVSTGRAKKASSKDEGSDCRSSNRSEDSEYRYTSDTDSLDNNDAAIKSEENEEDSCVRHSLSYETLASGNCVGGSPYTSSTFNGSWEHKEVISRDGKMKLHTQIFFASIDQRSERAAGESACAVLVAFIADWLRMNQVEMPIKCEFDSLIKDGSSEWRILCENKDYMKKFPDKHFDLDTVLQAKIRPVSVVPEKSFVGFFIPEEFEGGDFEFLHGAMSFDNIWEEISHSASELHMVSEPLVYIVSWNDHFFVLKVEQDAYYIIDTLGERLHEGCNQAYILKFDTSTKIEKLHNENQTLEPKSVSVAVQINGSEENVVDGAFIVTPNDRREEIICRGKESCKEYIKSFLAAIPVRELQGDVKKGLKASMPFHHRLQIEFHYTKLK 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi28g00103 745 ProSiteProfiles DOG1 domain profile. 35 253 IPR025422 GO:0006351|GO:0043565
Sebi28g00103 745 MobiDBLite consensus disorder prediction 370 403 - -
Sebi28g00103 745 Pfam N-terminal C2 in EEIG1 and EHBP1 proteins 217 339 IPR019448 -
Sebi28g00103 745 PANTHER C2 NT-TYPE DOMAIN-CONTAINING PROTEIN 444 744 - -
Sebi28g00103 745 Coils Coil 153 173 - -
Sebi28g00103 745 ProSiteProfiles C2 NT-type domain profile. 208 369 IPR019448 -
Sebi28g00103 745 Pfam Seed dormancy control 53 131 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi28g00103 Sebi-Chr28 1468548 1478841 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi28g00103 34 201 Calmodulin-binding Proteins AT5G10030 47.619 1.15e-37 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi28g00103 - - pvu:PHAVU_007G136900g 506.523