Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi28g00094 ATGGCAGGAAACTTCAGATTCATGATGGATCAGAAGGATGTTGTTAGATTCTTGACTACAACTGTTGATAGTTTCATTCAAGATCGATTAATCAACAAAGAACAAAGAACCCAACACAAAGAACAGTGTGCAGAGAGGTTAGCAGCTGAAGATGGAAGTTGTGACAAAGACACTGAGGTGGAATACTCTGATCAAGCAGTGTTAGCAAATCTTGATTGGGGTATTGAAGCCCTTGAAGAAGCTATCAATACCTATAATATGGAAACTAAGCTTGCCAGACTAGATTATGCTGAGAAAATGTTGCAAGTGTGTGCAATGTTGAATCCTAAGCAAAAGACTGCTGGAGTGCCAAACTCCTACCTCTCAGCTTGGGCACACCTAAACCTATCCTACTTATGGAAGTTGAGGAACAACATTCAAAATTGTATTTTTCATGTTCTTGAGATGTTCATTGTTGATCCTTTCTTCTCTCGGATTGATTTTGCTCCTGAACTCTGGAAAAACCTGTTTCTTCCACACATGAGCTCAATTGTTGGGTGGTATTCAGAAGAGAGGCACAGGCTTATGATGGAAGTGATACCTGACTCTTCTGATTTGTCCTTTACAGCTGATTTTGATCAATTTTTCAACGAGTCTTTGGTATTTTCTATGAGGCCACACCAATTAGAAAAGTTGCAAAAGCTGGAGCAGCTATATGGAGAGTCATTGGATGAGAACACACGGCTATATGCAAAATACTATAATGATTGCATGAACTCTGATTCCACCTCAAGCAAGAAGGTAGCTCCTATGTTGCCAATTGCCGAGCCTCCAATGACTCCTTTGCATGAGTTGAGCCGGTCTATTCCTGATTTTGTAAAATTTGGTCCTATTTTGCCCAAGAGTGCTGGATTTTCTTTGGCACCAAGATCTAAAGATGGTTTAAATGAAACAGTGAGAGAGAATTTAACTTCCAGTCATTCGAAGCAGGAGAAATCATCCCTATGGGGTGCTAAGGAGAGCATCATTGAAGAGAATGAAGATGATTCAGATTCTGAGCTTGATGATGCATCTGTGGATTCTGATAACAAAAACAATGTTTTCTCACCTGAAATGAAGAATATCAAGGATGAGGACATTGGGCCAAAAGTGAATTTATCAAACCAGAAGAATCGAATACATTCTCCTGAAATATTTTCTCCCTTGGGTTCCCCAAGAACTGCTACAAATAATGCATCTACAAATTCTGATATAAGAAGTAAAAGAGAATCTAAGTTCTTGCGCTTAATGTCTAGTCGTGTCAGGCACTCAAGTATTTCTGACTCTTTATCATCATCTCCTGACATGAGCACAGAGCACATTGTCAACTCTGATAACGAAGTGATGGTCTTGAAGAATATTCAGAGGAAAAACAATAACCAAACACCAAGTATGAATCATGACAATGAGAATAGCCTGGTACTAAATGACAGTTCCCTTTGTGAAAGTGATGATGGATATCAAAGCTTCACTTCATTGCCAAAACTAGAGAAGCTGACTATTGGATCAAAACCACCCAAAGATTTTGTTTGCCCAATCACAGGTCAGATATTTTGTGATCCTGTCACCCTTGAAACAGGCCAGACCTATGAAAGAAAAGCAATTCAAGAGTGGTTCAGAACAGGAAACACAACATGCCCCATCACACGACAGCCTTTATCTGCAAGCACATTACCCAAAACAAACTATGTTTTGAAGAGATTGATTACATCATGGAAAGAACAGAATCCTGAACTAGCTCAAGAATTCTCCAATGCTAACACACCAAGGGGTTCTTCCTGTTCTCCCTCTGCAAAAGACATCCCAATGCTCTCCACTATGCAAAGATCAACTGATATACCAAGTCATAAGAATAAAGAAGATTATGTCAGACAAAGGAGCAACAGATTTATGCGGGTTGCTGTCACAACATCTCCAACTAGTGTTCTGTCTCAAGCTGCAGTTGAAACAATCATGAATTCCTTGAAACCTTACATTGCAAGTCTCTGCACATCAGAAAACTTGCAAGAATACCCCAAAGATGCTGCAATAGCAGTTCTTGAGCAAATATTGATGGGAGGGGATGAACATAACAGGTCTCTTAATGCTATGAGTGTTATTTCAGCAAATGGAATTCCAGCCTTGGTGAAGTATTTGGAGAGAATGGAAGGAAGGAGAAGGACGTTCTGTAACCAGATATTACAGACAATCAAGGATGAAGGAGCATTCAGTACAATGCATACATTTCTTGTATACCTTCAGATGGCTCCAATGGAGCATCAAATTGCTGTTTCCAGTCTTCTTCTTCAGCTTGATCTTCTGGTTGAGCCGCGAAAGATGAGCATTTACAGGGAAGAAGCTGTAGAGACACTGATAGAAGCACTCTGGCAAAAGGACTTCTCAAATACTCAAATGAAGGCTTTAGATGCTTTACTATTTCTTATTGGACATGTCACTTCCTCCGGAAAGTCATATACTGAAGCTTGGTTGCTCAAGATTGCAGGATTCGATCAACCTTACAATGCTATAATGAAGGCTGAGCAGTTGGGACAGTATGACAACGATTTGATGGAAACAATGAGTAGCTTTTGTGCTTGCAATCATGAAAATGGTTCAATATTTCAAGCTTTGGAAGAATGCCTAAGGAGTAATTCCTTAAAGATGGCAAAATCTTGCCTTGTTCTTGCCACTTGGCTCACACACATGCTCTCTACTCTTCCGGATACCGGTGTAAGGGATGTTGCTCGCAAATCCTTGCTTGATGAACTTATAAATGTCCTTCAGTCATCCAAGAACTTGGAGGAAAAGATCCTGGCTACCCTAGCTTTGAAGACATTCATTAGTGATCCATTTGCCCACGAAGCATTTAGAGTTTATGCTAAAAGCATTTATAGAACCTTGAGGAAGCTGAAGAAATATTCAATGGTGGCTGTTGATATTATGAAAGTCATACTAAACTTACAATCTGTTGATGTGACAGAATTGTGGAGCTGTAAAGAAGTAGTTGAGTTAGATTTGAGCTCAAATGGAGAGGTTCTTTCTTTGCTTTATCTAAATGGTCAGGTCTTCAGTGGGCACTCTGATGGAACTATCAAGGTATGGGATGCAAGGAAGAGAATACCAAGAGTGATTCAAGAAACTCATGAGCACACAAAAGCTGTAACTTCTCTTTGTTCTTCAGTTGATAGACTATACAGTGGCTCCTTAGACAAAACCATCCGGGTTTGGACAATTAAACCTGATGGGATTAAATGTATAGATGTTTATGACATTAAGGAAGCAGTATATGAGCTGACAGCCGATGCTAAATTGGCATGCTATGTATCTCAAGGAACTGGAGTTTTTAATTGGTCAGAGGCTCCGAAGCACATCAATTTCAACAAATATGTGAAATGCCTTGCTGTTACTGGGGACAAACTGTATTGTGGTTGCTCTGGTTACAGCATTCAGGAGGTTGACTTGTCCAAATATACATCAAATTCATTCTTCTCTGGTACAAGAAAATTGTTGGGAAAACAAACCATACACTCCCTTCAAATTCATGATGATTACCTCTTTGCTTGTGGTTCTTCTGTTGATGCAACCGCAGGAAAGATATTTTCACTTTCCTCCAAAATGGTGGTGGGATCACTCTCAACTGGACTTGACATCCATCGTATAGCCATCAACAGTGACTTCATATTTGCTGGTACAAAATTTGGCACCATTGAGGTTTGGCTAAAAGATAAGTTAACCCGGGTTGCTTCCATCAAAATGGCTGGTGGTCACACAAAAATTACATCATTAGTATCAGATGCAGATGGTATGATGCTCTTTGTTGGTTCCTCTGATGGCAAGATCCAGGTTTGGGCTTTGGATTAA 3858 0.3987 MAGNFRFMMDQKDVVRFLTTTVDSFIQDRLINKEQRTQHKEQCAERLAAEDGSCDKDTEVEYSDQAVLANLDWGIEALEEAINTYNMETKLARLDYAEKMLQVCAMLNPKQKTAGVPNSYLSAWAHLNLSYLWKLRNNIQNCIFHVLEMFIVDPFFSRIDFAPELWKNLFLPHMSSIVGWYSEERHRLMMEVIPDSSDLSFTADFDQFFNESLVFSMRPHQLEKLQKLEQLYGESLDENTRLYAKYYNDCMNSDSTSSKKVAPMLPIAEPPMTPLHELSRSIPDFVKFGPILPKSAGFSLAPRSKDGLNETVRENLTSSHSKQEKSSLWGAKESIIEENEDDSDSELDDASVDSDNKNNVFSPEMKNIKDEDIGPKVNLSNQKNRIHSPEIFSPLGSPRTATNNASTNSDIRSKRESKFLRLMSSRVRHSSISDSLSSSPDMSTEHIVNSDNEVMVLKNIQRKNNNQTPSMNHDNENSLVLNDSSLCESDDGYQSFTSLPKLEKLTIGSKPPKDFVCPITGQIFCDPVTLETGQTYERKAIQEWFRTGNTTCPITRQPLSASTLPKTNYVLKRLITSWKEQNPELAQEFSNANTPRGSSCSPSAKDIPMLSTMQRSTDIPSHKNKEDYVRQRSNRFMRVAVTTSPTSVLSQAAVETIMNSLKPYIASLCTSENLQEYPKDAAIAVLEQILMGGDEHNRSLNAMSVISANGIPALVKYLERMEGRRRTFCNQILQTIKDEGAFSTMHTFLVYLQMAPMEHQIAVSSLLLQLDLLVEPRKMSIYREEAVETLIEALWQKDFSNTQMKALDALLFLIGHVTSSGKSYTEAWLLKIAGFDQPYNAIMKAEQLGQYDNDLMETMSSFCACNHENGSIFQALEECLRSNSLKMAKSCLVLATWLTHMLSTLPDTGVRDVARKSLLDELINVLQSSKNLEEKILATLALKTFISDPFAHEAFRVYAKSIYRTLRKLKKYSMVAVDIMKVILNLQSVDVTELWSCKEVVELDLSSNGEVLSLLYLNGQVFSGHSDGTIKVWDARKRIPRVIQETHEHTKAVTSLCSSVDRLYSGSLDKTIRVWTIKPDGIKCIDVYDIKEAVYELTADAKLACYVSQGTGVFNWSEAPKHINFNKYVKCLAVTGDKLYCGCSGYSIQEVDLSKYTSNSFFSGTRKLLGKQTIHSLQIHDDYLFACGSSVDATAGKIFSLSSKMVVGSLSTGLDIHRIAINSDFIFAGTKFGTIEVWLKDKLTRVASIKMAGGHTKITSLVSDADGMMLFVGSSDGKIQVWALD 1285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi28g00094 1285 Gene3D - 1121 1285 IPR015943 GO:0005515
Sebi28g00094 1285 Gene3D - 987 1120 IPR015943 GO:0005515
Sebi28g00094 1285 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 724 1284 - -
Sebi28g00094 1285 Pfam U-box domain 512 582 IPR003613 GO:0004842|GO:0016567
Sebi28g00094 1285 SMART WD40_4 1242 1283 IPR001680 GO:0005515
Sebi28g00094 1285 SMART WD40_4 1039 1076 IPR001680 GO:0005515
Sebi28g00094 1285 SMART WD40_4 996 1034 IPR001680 GO:0005515
Sebi28g00094 1285 MobiDBLite consensus disorder prediction 338 412 - -
Sebi28g00094 1285 Coils Coil 915 935 - -
Sebi28g00094 1285 SMART Ubox_2 514 578 IPR003613 GO:0004842|GO:0016567
Sebi28g00094 1285 ProSiteProfiles Trp-Asp (WD) repeats profile. 1251 1285 IPR001680 GO:0005515
Sebi28g00094 1285 MobiDBLite consensus disorder prediction 395 410 - -
Sebi28g00094 1285 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 501 593 IPR013083 -
Sebi28g00094 1285 SUPERFAMILY ARM repeat 651 967 IPR016024 -
Sebi28g00094 1285 ProSiteProfiles Trp-Asp (WD) repeats profile. 1046 1078 IPR001680 GO:0005515
Sebi28g00094 1285 SUPERFAMILY WD40 repeat-like 1019 1284 IPR036322 GO:0005515
Sebi28g00094 1285 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1251 1285 - -
Sebi28g00094 1285 SUPERFAMILY RING/U-box 510 583 - -
Sebi28g00094 1285 Pfam WD domain, G-beta repeat 1253 1282 IPR001680 GO:0005515
Sebi28g00094 1285 Pfam WD domain, G-beta repeat 1047 1075 IPR001680 GO:0005515
Sebi28g00094 1285 Pfam WD domain, G-beta repeat 1019 1034 IPR001680 GO:0005515
Sebi28g00094 1285 Gene3D - 640 969 IPR011989 -
Sebi28g00094 1285 CDD RING-Ubox_PUB 512 564 IPR045210 -
Sebi28g00094 1285 ProSiteProfiles U-box domain profile. 510 585 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi28g00094 Sebi-Chr28 1393840 1401028 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi28g00094 501 719 U-box Gene Family AT1G23030 33.610 1.69e-18 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi28g00094 - - gmx:100776142 1137.87