Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi28g00084 ATGCTAGAAAGTGAAGCCATGGGCATGGCTGTGCACATAAATCTAAAGCTCCATCACCTCTACCTTGTGATCCTATTCCTAGTAGTAGCACTAGCAAGAGCAGCCTCTCAACCAATGCCAAACTGCCCCCAAAACTGTGGCAATCTAAACATCCCATACCCATTTGGAACAAGTGAAGGTTGTTATTTGGATAACACTTTCCTCATCAGGTGTAACCATAACTCCACCCCTTTCTTGGGCCAAGACAACAATATAACCGTTCTCAACATATCTCTAGATGGGGAACTTGTCGTTTCGAGTCCAGTAGTCCACGATTGCTATGACATCAAAGGCGGCAACGATTTCCGTTATTCTGTTACGGAAAACGGTTTCAATTTGACTCATTTTTCTATCTCAAGCAAGAACAAATTTACGGCACTTGGCTGTGACACCGTTGGAATATTCGTTGGCTATGATCAGAACAGAAACAAGGCTACAAGAAAATTAGGATGTGTATCCATGTGTAGCACGGTGGTTGATGAAATCAAAACGGATGGCAATGGTGGAACTTGTAATTCTGGTAATGGTTGTTGCCAAATTTCAATTCCGGATGGACTGTATGGTTTTGCAATGCAAACTTGGAGTTGGAACAATCACTCCACCGTACTTGATTTCAATCCTTGTAACTATGCGTTTACGGTTAGAGAAGGAGATTACAGATTCTCTTCAACGGATCTTAAGAAACTTGAAAAGGAGAGTGTGCCTATGGTGCTTGATTGGGCAGTGGGAAATCAAGGGTACTGTAAAGAAGCTCAATATCTTAGTAGGTATGCATGCAAGGCTAAGAATAGTGTTTGCCACGATTCAACGAATGGAATTGGGTATATTTGCAAATGCAAACATGGTTTCATGGGAAACCCTTACCTCCATCATGGCTGCCAAGATATCAATGAATGCAATAGGAGGCCTAGCCCCTGCAGCAGAATATGCCAAAACGTTGCTGGGACGTATAAGTGTTCATGCCCGAAGGGATATGAGGGAGATGGGTTGAGAGATGGTGAAGGATGCCGGCCCAAAGACAAATCCATGGGGAATCTCATACTTATAATTGGACTGACTGAAAGAGCCACTATCTTCACTGCTGAAGAGCTCAAGAAAGCTACCAACAATTATGATGAGGAAAGAATCATAGGTAAAGGTGGTCATGGAACAGTATATAAAGGTGTATTAACAAATGGCAGAGTTGTAGCCATTAAGAAGTCCATGGTTTCTAACCAGACAGAGATAGAACAATTCATCAATGAAGTGGTTGTGCTATCCCAAATCAATCACAGGAATGTTGTCAAGTTGCTAGGTTGTTGTTTAGAGACAGAGGTTCCTCTGCTTGTTTATGAATTTATCACTAATGGAACCCTTTGTGATCATCTACATGTTGAAGTTGAACATCAAGCATGTAAACTTTCATGGACCACTCGTTTAAGAATTGCAGCAGAGACAGCAGAAGCACTTGCATATTTGCACTCTGCTGCTTCTACACCAATCATACATAGAGATGTAAAAACTGCAAATATACTTCTAGATGAAAACCTCACAACAAAAGTTTCTGATTTTGGGGCTTCAAAGCTTGTTCCTCTTGATCAAACTCAATTAACCACTTTGGTGCAAGGAACATTGGGTTACCTTGATCCTGAATACTTTCAATCAAGTCAGCTAACAGAGAAGAGTGATGTTTATAGCTTTGGGGTTGTTCTGGCAGAACTGCTAACAAGCAAGAAGGCACTTTCATTTCATAGGCCTGAGATTCATAGAAATCTTTCTATGTATTTTGTTTCTTCAATGAATGAGGGTGGATTGCAACAAATCCTAGACAATGAAATAGTGAGTGATGCAAATGTTGAGCATATAATAGAAGTTGCTAATCTAGCAAAAAGGTGTCTTAGGCTAAAGGGAGAAGAAAGACCAACCATGAAAGAAGTGGCATTGGAGTTGGAGGGAATAAGGACTGTGGAAAAACATTCATTAGGAAAAGCTAATGTATATGAAGAAGAGACTGAGTACTTTCTCAAAGTAAGTTCACCCCTTTACATCATGGACAATGGAGAAGGTAGTGGTGGTAGCAGTACAATTACTAGGTTTTATAATTTGCAAAACCAGATATTGGAACCACTGGCTCTGGGTGATGGACGATAA 2169 0.4071 MLESEAMGMAVHINLKLHHLYLVILFLVVALARAASQPMPNCPQNCGNLNIPYPFGTSEGCYLDNTFLIRCNHNSTPFLGQDNNITVLNISLDGELVVSSPVVHDCYDIKGGNDFRYSVTENGFNLTHFSISSKNKFTALGCDTVGIFVGYDQNRNKATRKLGCVSMCSTVVDEIKTDGNGGTCNSGNGCCQISIPDGLYGFAMQTWSWNNHSTVLDFNPCNYAFTVREGDYRFSSTDLKKLEKESVPMVLDWAVGNQGYCKEAQYLSRYACKAKNSVCHDSTNGIGYICKCKHGFMGNPYLHHGCQDINECNRRPSPCSRICQNVAGTYKCSCPKGYEGDGLRDGEGCRPKDKSMGNLILIIGLTERATIFTAEELKKATNNYDEERIIGKGGHGTVYKGVLTNGRVVAIKKSMVSNQTEIEQFINEVVVLSQINHRNVVKLLGCCLETEVPLLVYEFITNGTLCDHLHVEVEHQACKLSWTTRLRIAAETAEALAYLHSAASTPIIHRDVKTANILLDENLTTKVSDFGASKLVPLDQTQLTTLVQGTLGYLDPEYFQSSQLTEKSDVYSFGVVLAELLTSKKALSFHRPEIHRNLSMYFVSSMNEGGLQQILDNEIVSDANVEHIIEVANLAKRCLRLKGEERPTMKEVALELEGIRTVEKHSLGKANVYEEETEYFLKVSSPLYIMDNGEGSGGSSTITRFYNLQNQILEPLALGDGR 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi28g00084 722 SMART serkin_6 384 659 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi28g00084 722 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 323 334 IPR000152 -
Sebi28g00084 722 Pfam Calcium-binding EGF domain 308 339 IPR001881 GO:0005509
Sebi28g00084 722 SMART egf_5 311 350 IPR000742 -
Sebi28g00084 722 SMART egf_5 260 307 IPR000742 -
Sebi28g00084 722 FunFam Fibrillin 2 303 345 - -
Sebi28g00084 722 ProSiteProfiles EGF-like domain profile. 308 341 IPR000742 -
Sebi28g00084 722 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 34 663 IPR045274 GO:0007166
Sebi28g00084 722 SUPERFAMILY EGF/Laminin 306 353 - -
Sebi28g00084 722 CDD EGF_CA 308 341 - -
Sebi28g00084 722 SMART egfca_6 308 350 IPR001881 GO:0005509
Sebi28g00084 722 ProSitePatterns Calcium-binding EGF-like domain signature. 308 332 IPR018097 GO:0005509
Sebi28g00084 722 FunFam Wall-associated receptor kinase 2 460 679 - -
Sebi28g00084 722 SUPERFAMILY Protein kinase-like (PK-like) 361 656 IPR011009 -
Sebi28g00084 722 CDD STKc_IRAK 390 659 - -
Sebi28g00084 722 Gene3D Phosphorylase Kinase; domain 1 352 459 - -
Sebi28g00084 722 FunFam Wall-associated receptor kinase 2 360 459 - -
Sebi28g00084 722 ProSitePatterns Serine/Threonine protein kinases active-site signature. 507 519 IPR008271 GO:0004672|GO:0006468
Sebi28g00084 722 ProSitePatterns Protein kinases ATP-binding region signature. 390 413 IPR017441 GO:0005524
Sebi28g00084 722 Pfam Protein kinase domain 384 652 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi28g00084 722 Gene3D Laminin 268 342 - -
Sebi28g00084 722 Pfam Wall-associated receptor kinase galacturonan-binding 42 95 IPR025287 GO:0030247
Sebi28g00084 722 ProSiteProfiles Protein kinase domain profile. 384 659 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi28g00084 722 Gene3D Transferase(Phosphotransferase) domain 1 460 680 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi28g00084 Sebi-Chr28 1119477 1123752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi28g00084 15 683 Receptor kinase-like Gene Family AT1G21230 45.479 0.0 564
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Sebi28g00084 Pkinase 3.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi28g00084 - - vun:114190859 915.605