Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi28g00079 ATGGAAGCCACATTTCCCAAGATGGAAATCTTCACCCAAAAGGAATTGGCAACTTGTTTGCAAGAAATGGCAACAGGATCAAAGTTTTTGGACAGTACAATTATAAGAGGTTCTCACCCATTCACTGCTTCTCATCATGTTCATGTATTAAGAAGTGAGGTAAACTCATCAATAGTATCACCTGAAAAGCTTTTTTCATATTCAAATTCTACTTCAATGAAAGAAGAGGTGCCTTTAGCTGCCTTGAAGAGTCACATCCCTGCAAAGTTCAATGATCATGAAGACATGAAGAATGGGAAAGCAAAAAACCAATCCGTTTCTAGATTCAATTCTATCTCCACTCCTGGTGTCCCAGCCTCCTCAGATACAAAACATAGCTCTATTCCTCTAAATCTTTTGGAAACTCTCCCATCATTAACCATAGCACCAGTATCTGATGAGCCACCTGCTTCTTTAGCTTCTTCTTCTTCCACACCCAAATTTCCAAACTTGACTTTGTTTTTGCAGGAACCCTCCATGCTGTACACATCATCCTCAAACATGAAAAGTGGTGAAGTCATGTCAGCAACTTCAGACCCCACATACCATGTGTCCCAGTTTGGCCAAACCCAGCATCAAACAGGTAGTGATTCACACAGAATGAATAAGAATCTGACAAATCTGCGTTACAAGTCTTTCAATGACAATTGGTTGAGTACCACTAAGACTCAGCCTTTGAAGTATAGTGGAAGAGGCAAGCTGTTTAAAGGGGTGAGGCAGAGACATTGGGGGAAATGGGTTGCTGAGATTAGGTTACCAAGAAACAGGACAAGGGTTTGGTTAGGGACTTTTGACACAGCTGAAGATGCTGCCATTGCATATGACACAGCAGCATACATACTAAGAGGAGAATATGCTCAGTTGAACTTTCCAGATCTAAAGCATGTAATTCAGGCCAATTCTTTGAATGGAACTACTGCTGCACTTGTGGAGGCAAAACTGCAAGCAATATCTCAAGGTGTTGTTTCCTCTCATAGGAAGCCTAATTCACCAGCAGGGTCAAACAATAAGCACACCACTGATGATAATGGCGAATTGAAAAGCAAAAAAGGCAAGGATTCAACCATCAAGGAATGGCAGTTTGATATAGAGAGCAGGATTGGACTTGGAGGTGACACAACTGAGAGAAGCAAAAATACAAATCATGAGATATCAGATGTGGAAGGTGTTCAGTTAAGTAGAATGCCCTCCTTAGACATGGACATCATTTGGGATGAACTTTTAGTCTTTGATTCATGA 1278 0.41 MEATFPKMEIFTQKELATCLQEMATGSKFLDSTIIRGSHPFTASHHVHVLRSEVNSSIVSPEKLFSYSNSTSMKEEVPLAALKSHIPAKFNDHEDMKNGKAKNQSVSRFNSISTPGVPASSDTKHSSIPLNLLETLPSLTIAPVSDEPPASLASSSSTPKFPNLTLFLQEPSMLYTSSSNMKSGEVMSATSDPTYHVSQFGQTQHQTGSDSHRMNKNLTNLRYKSFNDNWLSTTKTQPLKYSGRGKLFKGVRQRHWGKWVAEIRLPRNRTRVWLGTFDTAEDAAIAYDTAAYILRGEYAQLNFPDLKHVIQANSLNGTTAALVEAKLQAISQGVVSSHRKPNSPAGSNNKHTTDDNGELKSKKGKDSTIKEWQFDIESRIGLGGDTTERSKNTNHEISDVEGVQLSRMPSLDMDIIWDELLVFDS 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi28g00079 425 CDD AP2 246 306 IPR001471 GO:0003700|GO:0006355
Sebi28g00079 425 FunFam Ethylene-responsive transcription factor 2 246 305 - -
Sebi28g00079 425 Gene3D AP2/ERF domain 247 305 IPR036955 GO:0003700|GO:0006355
Sebi28g00079 425 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 96 420 - -
Sebi28g00079 425 Pfam AP2 domain 248 296 IPR001471 GO:0003700|GO:0006355
Sebi28g00079 425 MobiDBLite consensus disorder prediction 91 125 - -
Sebi28g00079 425 ProSiteProfiles AP2/ERF domain profile. 247 304 IPR001471 GO:0003700|GO:0006355
Sebi28g00079 425 PRINTS Ethylene responsive element binding protein signature 248 259 IPR001471 GO:0003700|GO:0006355
Sebi28g00079 425 PRINTS Ethylene responsive element binding protein signature 270 286 IPR001471 GO:0003700|GO:0006355
Sebi28g00079 425 MobiDBLite consensus disorder prediction 333 352 - -
Sebi28g00079 425 MobiDBLite consensus disorder prediction 102 125 - -
Sebi28g00079 425 SMART rav1_2 247 310 IPR001471 GO:0003700|GO:0006355
Sebi28g00079 425 MobiDBLite consensus disorder prediction 333 366 - -
Sebi28g00079 425 SUPERFAMILY DNA-binding domain 247 305 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi28g00079 Sebi-Chr28 1098747 1100024 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi28g00079 126 420 AP2-EREBP Transcription Factor Family AT4G13620 43.548 5.39e-67 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sebi28g00079 AP2 2.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi28g00079 - - gmx:100820013 588.186