Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi28g00049 ATGAAGGAAAAGGTGGATTCCCCTATTACAGTGCTTGAGGACTATTTTAGGAGCTCAGATTCAGAATCAAGTTCTTCTAAAGAGCCTACAGTGGATTCTGAGTCTCAAGACATTTCAAAACCTGCTTCTAGATGGCATTCATTTCTTCAATTGTTGAGGAGCAGATCAAAGAAACAGATAGCCACATTGCATCCTCTCAATATCTCCAAAAGAATGAGCAGTAGCATGAGGGAATCCATATTGCCAAGTTGTTTCACAGATGCAACTTTGTCCCCTTGCAGATCACCATGGAAGATCTTCACTCATCATGAAATACAACTTGCAACCAATTATTTTAGCCAAGAAAATTTGATTGGAAAAGGTGGTTATGCTGAAGTTTACAAAGGGTGTTTGCCAAATCATGAGCTAGTAGCAATTAAAAGGCTAATAAGAGGAACAGCTGATGAAGTCATAGGGGATTTCTTATCAGAACTTGGTGTAATGGCACATGTAAACCATCCCAATACTGCTAAACTTGTTGGTTATGGTGTGGATGGGGGAATGTATCTAGTTCTTGAATTGTCTGAAAAAGGAAGCCTAGCTTCAGTGCTTTATGGTTCCAACGAGAAACTACCATGGTGTATTAGGCACAAAATTGCATTAGGAACAGCTAAGGGTGTATTATATCTTCATGAAGGTTGTCAAAGAAGAATCATCCACAGAGATATAAAAGCTGCCAATATATTGCTCACGGAGAACTATGAGCCTCAGATTTGTGACTTTGGGCTAGCAAAATGGCTGCCAGAGAATTGGACACACCACACAGTTGCAAAATTTGAAGGAACTTTTGGCTACCTAGCTCCTGAATACTTGCTTCATGGCATAGTAGATGAGAAAACGGACGTATTTGCCTTTGGGGTACTGTTATTAGAATTAGTCAGTGGGCGTAGAGCACTTGATTATTCACAGCAAAGCCTTGTTTTGTGGGCAAAACCATTGCTAAAAAAGAATGATATTAGGGAGCTTATTGATCCTTCATTAGTTGGTGACTATGACTCTAGGCAGATGAATCTCATGCTCTTGGCAGCTTCTTTATGCATACAACAGTCCTCAATTCGTCGACCCTCTATAAGACAGGTTGTACAACTACTGAATGGAAACCTTAGCTGCTTTAAGGGCATGAAGAAAACTCGGTTACCATTCTTCAGAAAAGTCTTCAGGGAAGAACTCATTGATTCTGAATAG 1224 0.3995 MKEKVDSPITVLEDYFRSSDSESSSSKEPTVDSESQDISKPASRWHSFLQLLRSRSKKQIATLHPLNISKRMSSSMRESILPSCFTDATLSPCRSPWKIFTHHEIQLATNYFSQENLIGKGGYAEVYKGCLPNHELVAIKRLIRGTADEVIGDFLSELGVMAHVNHPNTAKLVGYGVDGGMYLVLELSEKGSLASVLYGSNEKLPWCIRHKIALGTAKGVLYLHEGCQRRIIHRDIKAANILLTENYEPQICDFGLAKWLPENWTHHTVAKFEGTFGYLAPEYLLHGIVDEKTDVFAFGVLLLELVSGRRALDYSQQSLVLWAKPLLKKNDIRELIDPSLVGDYDSRQMNLMLLAASLCIQQSSIRRPSIRQVVQLLNGNLSCFKGMKKTRLPFFRKVFREELIDSE 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi28g00049 407 ProSitePatterns Protein kinases ATP-binding region signature. 118 140 IPR017441 GO:0005524
Sebi28g00049 407 ProSitePatterns Serine/Threonine protein kinases active-site signature. 231 243 IPR008271 GO:0004672|GO:0006468
Sebi28g00049 407 ProSiteProfiles Protein kinase domain profile. 112 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi28g00049 407 Pfam Protein kinase domain 113 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi28g00049 407 PANTHER OS08G0249100 PROTEIN 6 399 IPR046958 -
Sebi28g00049 407 SUPERFAMILY Protein kinase-like (PK-like) 89 377 IPR011009 -
Sebi28g00049 407 MobiDBLite consensus disorder prediction 14 39 - -
Sebi28g00049 407 Gene3D Phosphorylase Kinase; domain 1 87 186 - -
Sebi28g00049 407 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 189 391 - -
Sebi28g00049 407 MobiDBLite consensus disorder prediction 1 39 - -
Sebi28g00049 407 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK2 83 186 - -
Sebi28g00049 407 SMART serkin_6 112 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi28g00049 407 Gene3D Transferase(Phosphotransferase) domain 1 189 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi28g00049 Sebi-Chr28 753335 755713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi28g00049 99 373 Trihelix Transcription Factor Family AT1G68690 41.958 1.44e-66 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Sebi28g00049 Pkinase 6.8e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi28g00049 - - gmx:100780587 734.947