Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi28g00041 ATGGGGTCGAAGCCGTGGCTGTACCCCGCTTCCAACTATCGAACTCTAGAAAGCTACTGGGATACCGACGAAGACGCGCCTGGTCCTCGTTGTGCCCACACGCTCACTGCCGTCGCCGCCACCAAGACCCGTGGTCCACGCTTAATCCTCTTCGGCGGTGCCACTGCCATTGAAGGAGGATCTTCCTCAGCTCCCGGCATTCGATTAGCGGGAGTCACGAATTCCGTCCATTCATATGACGTTCAAACAAAAAAATGGACTAGGATTAAGCCTGCCGGAGAGCCGCCCTCTCCTCGGGCTGCCCATGCTGCTGCTGCAGTTGGCACCATGGTCGTTTTCCAGGGTGGGATAGGTCCTGCCGGACATTCTACTGATGATCTCTATGTGCTTGACTTGACCAATGATAAATACAAATGGCACAGAGTCGTTGTACAAGGGCAAGGACCCGGGCCTCGCTACGGCCATGCAATGGACTTGGTTGCTCAGAGATATCTTGTTACTGTCAGTGGAAATGATGGGAAACGTGTTGTATCTGAGGCTTGGGCTTTGGATACTGCTCAAAAACCTTATGTGTGGCAGAGGCTGAACCCAGAAGGTGATAGACCTTCTGCTAGAATGTACGCGACTGCTAGTGCCCGCTCAGATGGAATGTTTTTACTCTGTGGTGGAAGAGACTCTTCTGGAGCTCCGCTCGCAGATGCCTATGGACTGCTCATGCATAGGAATGGTCAGTGGGAATGGACCCTTGCACCTGGAGTTTCCCCTTCACCAAGGTATCAACATGCTGCGGTAAATTCAAGCAAGCAGATCTGCACAACACAATCCCTTCCTTGGGAGGGTCTTACAGATAATACAAAGCAAAAAATACAGATTCATCCCAACATACCAGATTCGCGCTACAGTATGTGCGTGAGTCAGTTGGAGAGGATGGGAGGGTCTAGCAGTGTTCACCGGAGATTTGCGAGGGCCTTAGCACAGCAGTTTGCTGGAGATCTGCCCAGTCTGTGTGTTGTTGGAGATGATGTGAAAGACGTTATGTTCGCAATTCGTTTTGGTATGTGGTACGGGTATGGGTATGCGGTTCGCTATCTTGTAAGGATTTGGTACATGGGGGTCTTTGTTGGTGCACGGTTACATGTTACAGGTGGTGTTCTCAGGGGTGGACGGGCTGTGGAAGGTGAAGCATCCATTGCAGTATTGGACACTGCTGCTGGGGTTTGGTTGGACAGAAATGGCATCGTCTCCTCCTCACGCTCAAATAGAAGTCATGATTATGACCCTTCTCTGGAGCTTATGCGTCGTTGTCGCCATGCAGCTGCGGCTGTTGGTGTTCAAATTTATATCTATGGTGGTCTTAGAGGAGATACACTACTAGATGATTTCTTAGTGGCTGAAAATTCACCAATTCAACCTGATGCTAATTCTCCTATGTTAACTGCTGAAAGAGCTTCGCCTGTTACAAGTCCCAAACAGAATCAGTCTAACTTCAATTATAATGTAACGACACCAAGTTTGGATGGTGGACCAGGCATTCCCTCGTCTGGTGGCTCAGGCATGGACAAAAATTCCATGGAGAAACTGAGGGAGGCATCAGCTGCTGAAGCTGAGGTAGCGAGTGCTGTCTGGCAAGCTGTGCAGGCTATATCAAGTAGTCCTGCTGAAGAGACATCTGTATCAGATGACAACTCACAAGCTGCAGAAACAGTTTCAGATGGAAGTGACACAGAGGGAGATGTTCGCCTTCATCCTAGAGCTGTTGTAGTTGCTAAAGAGGCTGTAGGTAATCTAAGTGGAATGATAATTTCAACTTTGCTTAGGCCTCGCAACTGGAAAGCTCCTGCAAACAGGCGATTCTTCTTGGATTCTTATGAAGTGGGAGAGCTTTGCTATGCTGCTGAGCAAATATTTATGCACGAACCAACCGTTCTTCAGCTAAAAGCTCCTGTCAAAGTATTTGGTGATCTTCATGGCCAGTTTGGTGATTTGATGCGGCTATTTGATGAATATGGATTTCCATCAACTGCAGGAGACATCACGTATATTGACTACCTGTTTTTGGGAGATTATGTTGATCGAGGACAGCACAGCTTGGAAACCATTACCTTGCTACTTGCTCTTAAGGCAGGCTACTGTTTAGTTTTATTAGTTATCGAATATCCTGAGAATGTTCACTTGATACGTGGAAACCATGAAGCTGCTGACATAAATGCACTGTTTGGTTTTCGTATAGAGTGCATTGAAAGAATGGGAGAAAATGATGGAATATGGGCATGGACACGATTCAATCAACTTTTTAACTATCTTCCACTAGCTGCTCTTATTGAAAAGAAAATTATCTGTATGCATGGTGGCATTGGAAGGTCTATCCATTCAGTAGAACAGATAGAGAAGCTTGAAAGGCCCATAACAATGGATGCAGGATCTATTATTTTAATGGACCTTTTATGGTCTGATCCCACAGAAAATGATAGTGTAGAGGGTTTGAGACCAAATGCTAGAGGGCCAGGGCTTGTCACTTTTGGGCCTGATCGTGTGACGGACTTCTGTAAGAAAAATAAATTACAGCTCATTATAAGGGCCCATGAATGTGTCATGGATGGTTTTGAGCGATTTGCCCAGGGACAATTAATCACACTTTTTTCTGCAACTAACTATTGTGGAACTGCAAACAATGCGGGAGCTATACTAGTAGTTGGTAGGGGTTTGGTTGTGGTTCCGAAATTAATTCATCCCATACCACCTCCCCTTCAGTCTCCCGAGACATCTCCTGAGCGAGTCATGGATGAGACATGGATGCAGGAGCTTAATATTCAGAGGCCACCAACTCCTACTCGGGGTCGACCACAGCCTGACCTTGACCGTGGCTCACTAGCATATATATAA 2883 0.4693 MGSKPWLYPASNYRTLESYWDTDEDAPGPRCAHTLTAVAATKTRGPRLILFGGATAIEGGSSSAPGIRLAGVTNSVHSYDVQTKKWTRIKPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKYKWHRVVVQGQGPGPRYGHAMDLVAQRYLVTVSGNDGKRVVSEAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDSSGAPLADAYGLLMHRNGQWEWTLAPGVSPSPRYQHAAVNSSKQICTTQSLPWEGLTDNTKQKIQIHPNIPDSRYSMCVSQLERMGGSSSVHRRFARALAQQFAGDLPSLCVVGDDVKDVMFAIRFGMWYGYGYAVRYLVRIWYMGVFVGARLHVTGGVLRGGRAVEGEASIAVLDTAAGVWLDRNGIVSSSRSNRSHDYDPSLELMRRCRHAAAAVGVQIYIYGGLRGDTLLDDFLVAENSPIQPDANSPMLTAERASPVTSPKQNQSNFNYNVTTPSLDGGPGIPSSGGSGMDKNSMEKLREASAAEAEVASAVWQAVQAISSSPAEETSVSDDNSQAAETVSDGSDTEGDVRLHPRAVVVAKEAVGNLSGMIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMHEPTVLQLKAPVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKAGYCLVLLVIEYPENVHLIRGNHEAADINALFGFRIECIERMGENDGIWAWTRFNQLFNYLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVTDFCKKNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHPIPPPLQSPETSPERVMDETWMQELNIQRPPTPTRGRPQPDLDRGSLAYI 960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi28g00041 960 SMART pp2a_7 620 913 IPR006186 GO:0016787
Sebi28g00041 960 ProSitePatterns Serine/threonine specific protein phosphatases signature. 726 731 IPR006186 GO:0016787
Sebi28g00041 960 Gene3D - 602 932 IPR029052 -
Sebi28g00041 960 MobiDBLite consensus disorder prediction 469 526 - -
Sebi28g00041 960 PIRSF STPPP_BSU1 590 960 IPR012391 GO:0004721|GO:0009742
Sebi28g00041 960 PIRSF STPPP_BSU1 360 600 IPR012391 GO:0004721|GO:0009742
Sebi28g00041 960 PIRSF STPPP_BSU1 1 275 IPR012391 GO:0004721|GO:0009742
Sebi28g00041 960 Gene3D - 7 308 IPR015915 GO:0005515
Sebi28g00041 960 MobiDBLite consensus disorder prediction 935 960 - -
Sebi28g00041 960 Pfam Galactose oxidase, central domain 115 157 - -
Sebi28g00041 960 Pfam Galactose oxidase, central domain 45 106 - -
Sebi28g00041 960 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE BSL3 600 960 - -
Sebi28g00041 960 Pfam Calcineurin-like phosphoesterase 648 864 IPR004843 GO:0016787
Sebi28g00041 960 SUPERFAMILY Kelch motif 19 273 IPR015915 GO:0005515
Sebi28g00041 960 PRINTS Serine/threonine phosphatase family signature 875 891 IPR006186 GO:0016787
Sebi28g00041 960 PRINTS Serine/threonine phosphatase family signature 853 873 IPR006186 GO:0016787
Sebi28g00041 960 PRINTS Serine/threonine phosphatase family signature 683 710 IPR006186 GO:0016787
Sebi28g00041 960 PRINTS Serine/threonine phosphatase family signature 648 675 IPR006186 GO:0016787
Sebi28g00041 960 PRINTS Serine/threonine phosphatase family signature 793 820 IPR006186 GO:0016787
Sebi28g00041 960 PRINTS Serine/threonine phosphatase family signature 763 789 IPR006186 GO:0016787
Sebi28g00041 960 PRINTS Serine/threonine phosphatase family signature 725 749 IPR006186 GO:0016787
Sebi28g00041 960 MobiDBLite consensus disorder prediction 551 578 - -
Sebi28g00041 960 MobiDBLite consensus disorder prediction 551 571 - -
Sebi28g00041 960 MobiDBLite consensus disorder prediction 480 508 - -
Sebi28g00041 960 SUPERFAMILY Metallo-dependent phosphatases 603 921 IPR029052 -
Sebi28g00041 960 FunFam Serine/threonine-protein phosphatase 9 192 - -
Sebi28g00041 960 FunFam Serine/threonine-protein phosphatase 587 933 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi28g00041 Sebi-Chr28 631303 644551 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi28g00041 649 856 Calmodulin-binding Proteins AT5G63870 32.636 9.97e-25 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi28g00041 K01090 - vvi:100249353 1177.16