Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi28g00038 ATGGCAGAGGGAAAGGAAGAGAGTAAATCTAGCGAGGAGAGTGTGAAACTGTTCGTAGGTCAAGTGCCCAAGCACATGACAGAAACTGAACTGCTTGCAATGTTCAAGGAGTTCACTTTGGTGGAAGAAGTCAACATCATCAGGGACAAAGCTACTCGTGCCTCCCGTGGTTGTTGCTTTGTGATTTGTCCTTCCAGGGAAGAGGCGGATAAGGCAGTCGAGGCCTGTCATAATAAGAAAACGCTTCCTGGGGCATCTAGTCCATTGCAAGTGAAGTATGCAGATGGCGAGTTGGAAAGATTAGAACACAAACTATTTATTGGCATGCTTCCAAAGAGTGTTTCTGAAGATGAAGTCTCTGCTCTTTTCTCCAAGTATGGAACAATAAAGGATTTACAGATTTTGAGAAGTCCCCAGCAAACAAGTAAAGGATGTGCATTTTTGAAGTACGAAACCAAAGAACAGGCCCTTGCTGCTCTCGAGGAAATCAATGGAAAGCATAAAATGGAGGGTTCAAGTGTTCCCTTGGTTGTCAAATGGGCGGATACCGAAAAAGAAAGACAAGCTCGAAAGGCTCAGAAAGCACAATCCCAAGTTTCCAATGTGCCACATGATGATTCTCAACACGCCTCATTATTTGGAGCCTTACCAATGGGTTATGTTCCCCCATATAATGGATATGGTTATCAGGCTCCTGGGGGTTATGGTCTCATGCCGTACCGTTATGCACCAATGCAGAATCAACCGGGTTTCCATAATATGATGCCTTACATGAACCAAGGAAATACATTGCGGCCTGATCTTGGTCGCAATATGAATCCTAGAAATTATCCTGTGCCTCCTATAAGTTACGTTGCCTCTTATTCTGCTGTGCCAGGTTTACAGCATCCAATGGCATACCCTGGAGGAATGATTAGTCCAAGGCCTGTGAGTAATTCTCCGGGTTCTGTTTCACCTGCTGGTGGGAATTACAACTCTGCTATATCTTCAGGCAGCACTAAAAATTCTGGTGGTCAGGTTGAAGGACCACTTGGTGCCAATCTATTTATTTATCACATACCTCAAGAATATGGAGATCAAGAACTTGCAACTGCATTTCAACCGTTTGGTACAGTTTTGAGTGCTAAAATTTTTGTTGATAAAGCAACTGGTGTAAGCAAATGTTTTGGATTTGTTAGTTATGATACTCCAGAAGCTGCTCAAGCTGCCATTAGTATGATGAATGGTCGCCAATTAGGTGGTAAGAAATTAAAGGTTCAGCTTAAGAGGGATAATAACAAACAGAACTATGTTGCTGCTAATGGCCACTACGACTTGGTTCATGAGTTCCCTAGAATTGGTAACAACCACCTCTTTAAGCACACATCATTGCGCCGGATCCGTCGCCTTGAGCTTGTTTGGGATGATGAAGAACAATTCAATGGTGTTGCAAAGTGTCGTTCTGAGGTGGCACAAAAGCTTCTTCTTGAGTGTGAATCCAAGAAAAAGAGAAGAATTCTCTCATCTGTTGTGGTTATGGTGGGTGGCTAA 1530 0.4327 MAEGKEESKSSEESVKLFVGQVPKHMTETELLAMFKEFTLVEEVNIIRDKATRASRGCCFVICPSREEADKAVEACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKSVSEDEVSALFSKYGTIKDLQILRSPQQTSKGCAFLKYETKEQALAALEEINGKHKMEGSSVPLVVKWADTEKERQARKAQKAQSQVSNVPHDDSQHASLFGALPMGYVPPYNGYGYQAPGGYGLMPYRYAPMQNQPGFHNMMPYMNQGNTLRPDLGRNMNPRNYPVPPISYVASYSAVPGLQHPMAYPGGMISPRPVSNSPGSVSPAGGNYNSAISSGSTKNSGGQVEGPLGANLFIYHIPQEYGDQELATAFQPFGTVLSAKIFVDKATGVSKCFGFVSYDTPEAAQAAISMMNGRQLGGKKLKVQLKRDNNKQNYVAANGHYDLVHEFPRIGNNHLFKHTSLRRIRRLELVWDDEEQFNGVAKCRSEVAQKLLLECESKKKRRILSSVVVMVGG 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi28g00038 509 Gene3D - 324 433 IPR012677 -
Sebi28g00038 509 FunFam RNA-binding protein BRN1 2 99 - -
Sebi28g00038 509 FunFam RNA-binding protein BRN1 isoform X1 100 192 - -
Sebi28g00038 509 PANTHER RNA BINDING PROTEIN 14 427 - -
Sebi28g00038 509 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 168 IPR000504 GO:0003723
Sebi28g00038 509 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 348 418 IPR000504 GO:0003723
Sebi28g00038 509 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 81 IPR000504 GO:0003723
Sebi28g00038 509 SUPERFAMILY RNA-binding domain, RBD 103 427 IPR035979 GO:0003676
Sebi28g00038 509 CDD RRM1_2_CELF1-6_like 16 92 - -
Sebi28g00038 509 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 346 424 IPR000504 GO:0003723
Sebi28g00038 509 Gene3D - 100 192 IPR012677 -
Sebi28g00038 509 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 183 IPR000504 GO:0003723
Sebi28g00038 509 SUPERFAMILY RNA-binding domain, RBD 9 98 IPR035979 GO:0003676
Sebi28g00038 509 SMART rrm1_1 104 179 IPR000504 GO:0003723
Sebi28g00038 509 SMART rrm1_1 347 420 IPR000504 GO:0003723
Sebi28g00038 509 SMART rrm1_1 16 92 IPR000504 GO:0003723
Sebi28g00038 509 FunFam RNA-binding protein BRN1 313 423 - -
Sebi28g00038 509 Gene3D - 2 99 IPR012677 -
Sebi28g00038 509 MobiDBLite consensus disorder prediction 311 338 - -
Sebi28g00038 509 PRINTS Paraneoplastic encephalomyelitis antigen family signature 123 135 IPR002343 GO:0003723|GO:1990904
Sebi28g00038 509 PRINTS Paraneoplastic encephalomyelitis antigen family signature 164 181 IPR002343 GO:0003723|GO:1990904
Sebi28g00038 509 PRINTS Paraneoplastic encephalomyelitis antigen family signature 15 30 IPR002343 GO:0003723|GO:1990904
Sebi28g00038 509 PRINTS Paraneoplastic encephalomyelitis antigen family signature 108 123 IPR002343 GO:0003723|GO:1990904
Sebi28g00038 509 CDD RRM3_CELF1-6 348 420 - -
Sebi28g00038 509 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 96 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi28g00038 Sebi-Chr28 574348 582087 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi28g00038 347 471 Eukaryotic Initiation Factors Gene Family AT1G49760 35.200 1.84e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi28g00038 K13207 - gmx:100813239 734.561